Gene annotation
Transcriptome id Sobic.006G115466.1
Synonym -
Functional annotation -
UniProt A0A1Z5RDC9
Pfam -
Panther DB PTHR34562 PTHR34562:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56210 : WPP domain interacting protein 2
RAP-DB (Rice) LOC_Os04g39540.1 : expressed protein
MaizeGDB (Corn) Zm00025a056276 , Zm00025a011041
Brachypodium -
Barley HORVU2Hr1G081800.4 , HORVU2Hr1G081800.3 , HORVU2Hr1G081800.1
Wheat TraesCS2D02G332000 , TraesCS2A02G331000 , TraesCS2B02G351300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
2 Sobic.002G314900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.007G028100 WD repeat-containing protein, putative, expressed -
4 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
5 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
6 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
7 Sobic.008G061100 expressed protein -
8 Sobic.004G349800 expressed protein -
9 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
10 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
11 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
12 Sobic.003G146900 lipase class 3 family protein, putative, expressed -
13 Sobic.001G501000 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
14 Sobic.002G382600 expressed protein -
15 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
16 Sobic.007G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type family protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
17 Sobic.003G356400 expressed protein -
18 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
19 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
20 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3


Gene co-expression network
sample Sobic006G115466 Sobic006G115466 Sobic001G298300 Sobic001G298300 Sobic006G115466--Sobic001G298300 Sobic002G314900 Sobic002G314900 Sobic006G115466--Sobic002G314900 Sobic007G028100 Sobic007G028100 Sobic006G115466--Sobic007G028100 Sobic001G279100 Sobic001G279100 Sobic006G115466--Sobic001G279100 Sobic010G129600 Sobic010G129600 Sobic006G115466--Sobic010G129600 Sobic001G436900 Sobic001G436900 Sobic006G115466--Sobic001G436900 Sobic008G061100 Sobic008G061100 Sobic006G115466--Sobic008G061100 Sobic004G349800 Sobic004G349800 Sobic006G115466--Sobic004G349800 Sobic006G004500 Sobic006G004500 Sobic006G115466--Sobic006G004500 Sobic001G298300--Sobic006G115466 Sobic006G271200 Sobic006G271200 Sobic001G298300--Sobic006G271200 Sobic004G102400 Sobic004G102400 Sobic001G298300--Sobic004G102400 Sobic001G003000 Sobic001G003000 Sobic001G298300--Sobic001G003000 Sobic001G085900 Sobic001G085900 Sobic001G298300--Sobic001G085900 Sobic001G298300--Sobic010G129600 Sobic001G298300--Sobic001G436900 Sobic007G178100 Sobic007G178100 Sobic001G298300--Sobic007G178100 Sobic006G237900 Sobic006G237900 Sobic001G298300--Sobic006G237900 Sobic002G314900--Sobic007G028100 Sobic002G314900--Sobic001G279100 Sobic001G005600 Sobic001G005600 Sobic002G314900--Sobic001G005600 Sobic003G146900 Sobic003G146900 Sobic002G314900--Sobic003G146900 Sobic002G314900--Sobic006G115466 Sobic004G091200 Sobic004G091200 Sobic002G314900--Sobic004G091200 Sobic002G314900--Sobic010G129600 Sobic001G135500 Sobic001G135500 Sobic002G314900--Sobic001G135500 Sobic001G517500 Sobic001G517500 Sobic002G314900--Sobic001G517500 Sobic007G028100--Sobic002G314900 Sobic004G237400 Sobic004G237400 Sobic007G028100--Sobic004G237400 Sobic007G000200 Sobic007G000200 Sobic007G028100--Sobic007G000200 Sobic007G028100--Sobic006G115466 Sobic003G089000 Sobic003G089000 Sobic007G028100--Sobic003G089000 Sobic007G028100--Sobic006G004500 Sobic007G028100--Sobic001G436900 Sobic002G382600 Sobic002G382600 Sobic007G028100--Sobic002G382600 Sobic009G069000 Sobic009G069000 Sobic007G028100--Sobic009G069000 Sobic001G279100--Sobic002G382600 Sobic001G279100--Sobic008G061100 Sobic001G279100--Sobic002G314900 Sobic007G119200 Sobic007G119200 Sobic001G279100--Sobic007G119200 Sobic001G279100--Sobic001G517500 Sobic001G279100--Sobic010G129600 Sobic001G279100--Sobic006G115466 Sobic007G046200 Sobic007G046200 Sobic001G279100--Sobic007G046200 Sobic001G279100--Sobic001G436900 Sobic010G129600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic010G129600--Sobic001G161900 Sobic001G313500 Sobic001G313500 Sobic010G129600--Sobic001G313500 Sobic010G129600--Sobic006G271200 Sobic010G129600--Sobic004G091200 Sobic010G261600 Sobic010G261600 Sobic010G129600--Sobic010G261600 Sobic009G160600 Sobic009G160600 Sobic010G129600--Sobic009G160600 Sobic010G129600--Sobic006G237900 Sobic010G129600--Sobic008G061100 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic009G113000 Sobic009G113000 Sobic001G436900--Sobic009G113000 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200 Sobic008G061100--Sobic001G279100 Sobic008G061100--Sobic010G129600 Sobic003G304200 Sobic003G304200 Sobic008G061100--Sobic003G304200 Sobic008G061100--Sobic006G237900 Sobic008G061100--Sobic006G271200 Sobic008G061100--Sobic001G298300 Sobic008G186200 Sobic008G186200 Sobic008G061100--Sobic008G186200 Sobic008G061100--Sobic006G115466 Sobic008G061100--Sobic001G436900 Sobic004G320000 Sobic004G320000 Sobic004G349800--Sobic004G320000 Sobic004G203100 Sobic004G203100 Sobic004G349800--Sobic004G203100 Sobic004G349800--Sobic003G146900 Sobic010G168600 Sobic010G168600 Sobic004G349800--Sobic010G168600 Sobic001G124300 Sobic001G124300 Sobic004G349800--Sobic001G124300 Sobic002G256300 Sobic002G256300 Sobic004G349800--Sobic002G256300 Sobic009G171700 Sobic009G171700 Sobic004G349800--Sobic009G171700 Sobic001G512900 Sobic001G512900 Sobic004G349800--Sobic001G512900 Sobic002G352700 Sobic002G352700 Sobic004G349800--Sobic002G352700 Sobic006G004500--Sobic004G237400 Sobic006G004500--Sobic001G436900 Sobic006G004500--Sobic003G089000 Sobic002G058500 Sobic002G058500 Sobic006G004500--Sobic002G058500 Sobic002G105200 Sobic002G105200 Sobic006G004500--Sobic002G105200 Sobic006G004500--Sobic007G028100 Sobic006G004500--Sobic007G000200 Sobic006G004500--Sobic009G113000 Sobic007G060000 Sobic007G060000 Sobic006G004500--Sobic007G060000
Octagon: transcription factors


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