Gene annotation
Transcriptome id Sobic.001G417600.1
Synonym Sb01g039300, ATADF4, ADF4
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
actin-depolymerizing factor, putative, expressed
UniProt C5WPD3
Pfam PF00241
Panther DB PTHR11913 PTHR11913:SF30
NCBI CDD KOG1735; Actin depolymerizing factor
KEGG Orthology K05765; cofilin
Gene Ontology GO:0005622; intracellular GO:0003779actin binding GO:0015629actin cytoskeleton


Orthologs (automatic annotation)
TAIR AT5G59890 : actin depolymerizing factor 4
RAP-DB (Rice) LOC_Os04g46910.1 : actin-depolymerizing factor, putative, expressed
MaizeGDB (Corn) Zm00025a001529 , Zm00025a040911 , Zm00025a052910
Brachypodium KQK22600 , PNT77739
Barley HORVU4Hr1G063830.4 , HORVU4Hr1G063830.5 , HORVU4Hr1G063830.6 , HORVU4Hr1G063830.7 , HORVU4Hr1G063830.2 , HORVU4Hr1G063830.3 , HORVU0Hr1G000200.1 , HORVU0Hr1G000200.2 , HORVU0Hr1G000200.3
Wheat TraesCS4A02G071400 , TraesCS4D02G228100 , TraesCS4B02G227300
Populus PNT41746 , PNT41748 , PNT41749 , PNT41747


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cDNA sequences
Sobic.001G417600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G133700 - -
2 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
3 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
4 Sobic.003G036700 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
5 Sobic.001G082500 cytochrome P450, putative, expressed -
6 Sobic.009G208500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
7 Sobic.006G147400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@A NAC transcription factor controlling cell collapse and secondary cell wall composition in the stem(PubMedID : 30309900)@We identified D as a single gene encoding a NAC transcription factor that controls the expression of genes involved in plant PCD (programmed cell death).(PubMedID : 30150370)@"we apply fine-mapping and genome-wide association study (GWAS) to identify a candidate gene underlying D, and use nearly isogenic lines (NILs) to characterize the transcriptional, compositional, and agronomic effects of variation at the D locus."(PubMedID : 31245734)@no apical meristem protein, putative, expressed -
8 Sobic.007G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type family protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
9 Sobic.007G194800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@triacylglycerol lipase precursor, putative, expressed K01052: lysosomal acid lipase/cholesteryl ester hydrolase
10 Sobic.003G272600 expressed protein -
11 Sobic.004G214000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphoribosyl transferase, putative, expressed K00759: APRT, adenine phosphoribosyltransferase
12 Sobic.006G115466 - -
13 Sobic.006G146200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Os4bglu18 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
14 Sobic.003G356400 expressed protein -
15 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
16 Sobic.005G019800 ZF-HD protein dimerisation region containing protein, expressed -
17 Sobic.001G430900 ubiquitin fusion protein, putative, expressed -
18 Sobic.006G132400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
19 Sobic.010G198100 expressed protein -
20 Sobic.005G175200 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic001G417600 Sobic001G417600 Sobic010G133700 Sobic010G133700 Sobic001G417600--Sobic010G133700 Sobic006G139000 Sobic006G139000 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic003G036700 Sobic003G036700 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic006G147400 Sobic006G147400 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800 Sobic010G133700--Sobic001G417600 Sobic010G133700--Sobic003G036700 Sobic005G175200 Sobic005G175200 Sobic010G133700--Sobic005G175200 Sobic003G095600 Sobic003G095600 Sobic010G133700--Sobic003G095600 Sobic010G133700--Sobic006G147400 Sobic010G198100 Sobic010G198100 Sobic010G133700--Sobic010G198100 Sobic010G133700--Sobic001G082500 Sobic010G133700--Sobic007G194800 Sobic006G132400 Sobic006G132400 Sobic010G133700--Sobic006G132400 Sobic002G058500 Sobic002G058500 Sobic006G139000--Sobic002G058500 Sobic006G139000--Sobic001G417600 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic001G280000--Sobic006G139000 Sobic001G280000--Sobic001G417600 Sobic001G280000--Sobic002G058500 Sobic001G227800 Sobic001G227800 Sobic001G280000--Sobic001G227800 Sobic001G162700 Sobic001G162700 Sobic001G280000--Sobic001G162700 Sobic001G280000--Sobic005G019800 Sobic010G098100 Sobic010G098100 Sobic001G280000--Sobic010G098100 Sobic001G251900 Sobic001G251900 Sobic001G280000--Sobic001G251900 Sobic003G259200 Sobic003G259200 Sobic001G280000--Sobic003G259200 Sobic003G036700--Sobic010G133700 Sobic001G196700 Sobic001G196700 Sobic003G036700--Sobic001G196700 Sobic003G036700--Sobic006G132400 Sobic003G036700--Sobic003G095600 Sobic010G168500 Sobic010G168500 Sobic003G036700--Sobic010G168500 Sobic003G036700--Sobic001G417600 Sobic003G036700--Sobic001G082500 Sobic003G376000 Sobic003G376000 Sobic003G036700--Sobic003G376000 Sobic003G036700--Sobic006G147400 Sobic001G082500--Sobic003G036700 Sobic001G082500--Sobic001G417600 Sobic001G082500--Sobic010G133700 Sobic001G082500--Sobic006G147400 Sobic001G082500--Sobic006G132400 Sobic001G082500--Sobic001G196700 Sobic001G082500--Sobic006G139000 Sobic001G082500--Sobic007G194800 Sobic001G082500--Sobic001G280000 Sobic009G208500--Sobic007G178100 Sobic009G208500--Sobic001G417600 Sobic009G208500--Sobic010G133700 Sobic006G220900 Sobic006G220900 Sobic009G208500--Sobic006G220900 Sobic009G208500--Sobic001G251900 Sobic001G430900 Sobic001G430900 Sobic009G208500--Sobic001G430900 Sobic004G338800 Sobic004G338800 Sobic009G208500--Sobic004G338800 Sobic004G246200 Sobic004G246200 Sobic009G208500--Sobic004G246200 Sobic004G074500 Sobic004G074500 Sobic009G208500--Sobic004G074500 Sobic006G147400--Sobic010G133700 Sobic006G147400--Sobic003G036700 Sobic006G147400--Sobic001G417600 Sobic006G147400--Sobic003G095600 Sobic006G147400--Sobic006G132400 Sobic008G154400 Sobic008G154400 Sobic006G147400--Sobic008G154400 Sobic006G147400--Sobic003G376000 Sobic004G214000 Sobic004G214000 Sobic006G147400--Sobic004G214000 Sobic006G147400--Sobic001G196700 Sobic007G178100--Sobic009G208500 Sobic007G178100--Sobic001G251900 Sobic007G178100--Sobic001G417600 Sobic001G298300 Sobic001G298300 Sobic007G178100--Sobic001G298300 Sobic009G038501 Sobic009G038501 Sobic007G178100--Sobic009G038501 Sobic004G236600 Sobic004G236600 Sobic007G178100--Sobic004G236600 Sobic001G151800 Sobic001G151800 Sobic007G178100--Sobic001G151800 Sobic007G178100--Sobic004G246200 Sobic009G004200 Sobic009G004200 Sobic007G178100--Sobic009G004200 Sobic007G194800--Sobic003G036700 Sobic007G194800--Sobic001G417600 Sobic007G194800--Sobic010G133700 Sobic007G194800--Sobic001G196700 Sobic007G194800--Sobic006G147400 Sobic007G194800--Sobic006G132400 Sobic007G194800--Sobic010G168500 Sobic009G237700 Sobic009G237700 Sobic007G194800--Sobic009G237700 Sobic007G194800--Sobic001G082500
Octagon: transcription factors


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