Gene annotation
Transcriptome id Sobic.009G208500.1
Synonym Sb09g026490
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
DUF584 domain containing protein, putative, expressed
UniProt C5Z1H8
Pfam PF04520
Panther DB PTHR33083 PTHR33083:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34340 : Protein of unknown function, DUF584
RAP-DB (Rice) LOC_Os05g45450.1 : DUF584 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK05240
Barley HORVU1Hr1G081240.2 , HORVU1Hr1G081240.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G208500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type family protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
2 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
3 Sobic.010G133700 - -
4 Sobic.006G220900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
5 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
6 Sobic.001G430900 ubiquitin fusion protein, putative, expressed -
7 Sobic.004G338800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
8 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
9 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
10 Sobic.001G280000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
11 Sobic.006G261550 - -
12 Sobic.001G082500 cytochrome P450, putative, expressed -
13 Sobic.006G115466 - -
14 Sobic.010G016800 - -
15 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
16 Sobic.003G269700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@SAM dependent carboxyl methyltransferase, putative, expressed -
17 Sobic.003G390900 lipase, putative, expressed -
18 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
19 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic009G208500 Sobic009G208500 Sobic007G178100 Sobic007G178100 Sobic009G208500--Sobic007G178100 Sobic001G417600 Sobic001G417600 Sobic009G208500--Sobic001G417600 Sobic010G133700 Sobic010G133700 Sobic009G208500--Sobic010G133700 Sobic006G220900 Sobic006G220900 Sobic009G208500--Sobic006G220900 Sobic001G251900 Sobic001G251900 Sobic009G208500--Sobic001G251900 Sobic001G430900 Sobic001G430900 Sobic009G208500--Sobic001G430900 Sobic004G338800 Sobic004G338800 Sobic009G208500--Sobic004G338800 Sobic004G246200 Sobic004G246200 Sobic009G208500--Sobic004G246200 Sobic004G074500 Sobic004G074500 Sobic009G208500--Sobic004G074500 Sobic007G178100--Sobic009G208500 Sobic007G178100--Sobic001G251900 Sobic007G178100--Sobic001G417600 Sobic001G298300 Sobic001G298300 Sobic007G178100--Sobic001G298300 Sobic009G038501 Sobic009G038501 Sobic007G178100--Sobic009G038501 Sobic004G236600 Sobic004G236600 Sobic007G178100--Sobic004G236600 Sobic001G151800 Sobic001G151800 Sobic007G178100--Sobic001G151800 Sobic007G178100--Sobic004G246200 Sobic009G004200 Sobic009G004200 Sobic007G178100--Sobic009G004200 Sobic001G417600--Sobic010G133700 Sobic006G139000 Sobic006G139000 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic003G036700 Sobic003G036700 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic001G417600--Sobic009G208500 Sobic006G147400 Sobic006G147400 Sobic001G417600--Sobic006G147400 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800 Sobic010G133700--Sobic001G417600 Sobic010G133700--Sobic003G036700 Sobic005G175200 Sobic005G175200 Sobic010G133700--Sobic005G175200 Sobic003G095600 Sobic003G095600 Sobic010G133700--Sobic003G095600 Sobic010G133700--Sobic006G147400 Sobic010G198100 Sobic010G198100 Sobic010G133700--Sobic010G198100 Sobic010G133700--Sobic001G082500 Sobic010G133700--Sobic007G194800 Sobic006G132400 Sobic006G132400 Sobic010G133700--Sobic006G132400 Sobic001G058100 Sobic001G058100 Sobic006G220900--Sobic001G058100 Sobic001G289400 Sobic001G289400 Sobic006G220900--Sobic001G289400 Sobic001G026900 Sobic001G026900 Sobic006G220900--Sobic001G026900 Sobic004G276100 Sobic004G276100 Sobic006G220900--Sobic004G276100 Sobic004G335000 Sobic004G335000 Sobic006G220900--Sobic004G335000 Sobic008G179500 Sobic008G179500 Sobic006G220900--Sobic008G179500 Sobic002G083266 Sobic002G083266 Sobic006G220900--Sobic002G083266 Sobic004G301400 Sobic004G301400 Sobic006G220900--Sobic004G301400 Sobic007G096700 Sobic007G096700 Sobic006G220900--Sobic007G096700 Sobic001G483500 Sobic001G483500 Sobic001G251900--Sobic001G483500 Sobic003G219600 Sobic003G219600 Sobic001G251900--Sobic003G219600 Sobic004G006966 Sobic004G006966 Sobic001G251900--Sobic004G006966 Sobic006G100400 Sobic006G100400 Sobic001G251900--Sobic006G100400 Sobic005G151700 Sobic005G151700 Sobic001G251900--Sobic005G151700 Sobic001G430900--Sobic001G417600 Sobic001G430900--Sobic009G208500 Sobic001G430900--Sobic006G139000 Sobic003G272600 Sobic003G272600 Sobic001G430900--Sobic003G272600 Sobic006G115466 Sobic006G115466 Sobic001G430900--Sobic006G115466 Sobic001G430900--Sobic004G338800 Sobic001G430900--Sobic010G133700 Sobic001G430900--Sobic007G178100 Sobic003G214400 Sobic003G214400 Sobic001G430900--Sobic003G214400 Sobic001G359700 Sobic001G359700 Sobic004G338800--Sobic001G359700 Sobic004G338800--Sobic009G208500 Sobic004G338800--Sobic001G430900 Sobic001G505300 Sobic001G505300 Sobic004G338800--Sobic001G505300 Sobic006G212400 Sobic006G212400 Sobic004G338800--Sobic006G212400 Sobic008G154801 Sobic008G154801 Sobic004G338800--Sobic008G154801 Sobic004G338800--Sobic001G417600 Sobic003G091550 Sobic003G091550 Sobic004G338800--Sobic003G091550 Sobic003G224700 Sobic003G224700 Sobic004G338800--Sobic003G224700 Sobic005G152100 Sobic005G152100 Sobic004G246200--Sobic005G152100 Sobic005G018500 Sobic005G018500 Sobic004G246200--Sobic005G018500 Sobic003G259200 Sobic003G259200 Sobic004G246200--Sobic003G259200 Sobic004G255000 Sobic004G255000 Sobic004G246200--Sobic004G255000 Sobic001G412700 Sobic001G412700 Sobic004G246200--Sobic001G412700 Sobic004G260000 Sobic004G260000 Sobic004G246200--Sobic004G260000 Sobic002G322900 Sobic002G322900 Sobic004G246200--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic004G246200--Sobic009G054500 Sobic008G024400 Sobic008G024400 Sobic004G246200--Sobic008G024400 Sobic003G085300 Sobic003G085300 Sobic004G074500--Sobic003G085300 Sobic002G090200 Sobic002G090200 Sobic004G074500--Sobic002G090200 Sobic004G308000 Sobic004G308000 Sobic004G074500--Sobic004G308000 Sobic007G003200 Sobic007G003200 Sobic004G074500--Sobic007G003200 Sobic004G074500--Sobic004G246200 Sobic001G101400 Sobic001G101400 Sobic004G074500--Sobic001G101400 Sobic010G016800 Sobic010G016800 Sobic004G074500--Sobic010G016800 Sobic001G212000 Sobic001G212000 Sobic004G074500--Sobic001G212000 Sobic006G140000 Sobic006G140000 Sobic004G074500--Sobic006G140000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.