Gene annotation
Transcriptome id Sobic.006G261550.1
Synonym -
Functional annotation -
UniProt A0A1Z5RFN3
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G003200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
2 Sobic.004G006966 - -
3 Sobic.004G006966 - -
4 Sobic.004G006966 - -
5 Sobic.004G006966 - -
6 Sobic.004G006966 - -
7 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
8 Sobic.010G016800 - -
9 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.008G024400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@thaumatin-like protein 1 precursor, putative, expressed -
11 Sobic.002G035700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
12 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
13 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
14 Sobic.009G061300 - -
15 Sobic.002G182850 - -
16 Sobic.002G209000 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
17 Sobic.003G374150 - -
18 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
19 Sobic.008G006500 zinc knuckle family protein, expressed -
20 Sobic.005G136800 only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase


Gene co-expression network
sample Sobic006G261550 Sobic006G261550 Sobic007G003200 Sobic007G003200 Sobic006G261550--Sobic007G003200 Sobic004G006966 Sobic004G006966 Sobic006G261550--Sobic004G006966 Sobic001G483500 Sobic001G483500 Sobic006G261550--Sobic001G483500 Sobic010G016800 Sobic010G016800 Sobic006G261550--Sobic010G016800 Sobic001G412700 Sobic001G412700 Sobic006G261550--Sobic001G412700 Sobic001G101400 Sobic001G101400 Sobic007G003200--Sobic001G101400 Sobic004G074500 Sobic004G074500 Sobic007G003200--Sobic004G074500 Sobic007G003200--Sobic010G016800 Sobic001G212000 Sobic001G212000 Sobic007G003200--Sobic001G212000 Sobic007G003200--Sobic006G261550 Sobic008G024400 Sobic008G024400 Sobic007G003200--Sobic008G024400 Sobic003G085300 Sobic003G085300 Sobic007G003200--Sobic003G085300 Sobic002G209000 Sobic002G209000 Sobic007G003200--Sobic002G209000 Sobic007G003200--Sobic001G483500 Sobic004G006966--Sobic004G006966 Sobic003G374150 Sobic003G374150 Sobic004G006966--Sobic003G374150 Sobic005G136800 Sobic005G136800 Sobic004G006966--Sobic005G136800 Sobic004G006966--Sobic010G016800 Sobic004G006966--Sobic001G483500 Sobic002G182850 Sobic002G182850 Sobic004G006966--Sobic002G182850 Sobic010G098100 Sobic010G098100 Sobic001G483500--Sobic010G098100 Sobic005G151700 Sobic005G151700 Sobic001G483500--Sobic005G151700 Sobic001G483500--Sobic004G006966 Sobic001G483500--Sobic001G101400 Sobic001G251900 Sobic001G251900 Sobic001G483500--Sobic001G251900 Sobic010G016800--Sobic004G006966 Sobic010G016800--Sobic001G101400 Sobic010G016800--Sobic003G374150 Sobic010G016800--Sobic001G483500 Sobic010G016800--Sobic005G136800 Sobic004G255000 Sobic004G255000 Sobic001G412700--Sobic004G255000 Sobic003G259200 Sobic003G259200 Sobic001G412700--Sobic003G259200 Sobic005G152100 Sobic005G152100 Sobic001G412700--Sobic005G152100 Sobic003G269700 Sobic003G269700 Sobic001G412700--Sobic003G269700 Sobic004G246200 Sobic004G246200 Sobic001G412700--Sobic004G246200 Sobic001G412700--Sobic001G212000 Sobic009G029600 Sobic009G029600 Sobic001G412700--Sobic009G029600 Sobic002G322900 Sobic002G322900 Sobic001G412700--Sobic002G322900 Sobic005G018500 Sobic005G018500 Sobic001G412700--Sobic005G018500
Octagon: transcription factors


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