Gene annotation
Transcriptome id Sobic.005G136800.1
Synonym Chalcone synthase, TT4, Sb05g020190, ATCHS, SbCHS2c;chalcone synthase (CHS)-like gene 2, SbCHS2, CHS
Functional annotation only inducible by pathogen inoculation (PubMedID : 20529887)
"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites." (PubMedID : 15821144)
chalcone synthase, putative, expressed
UniProt -
Pfam PF08541 PF00195
Panther DB PTHR11877 PTHR11877:SF27
NCBI CDD -
KEGG Orthology K00660; chalcone synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os11g32650.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a015696 , Zm00025a033582
Brachypodium KQJ88357
Barley HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU2Hr1G004170.1 , HORVU2Hr1G004170.2 , HORVU2Hr1G004170.3 , HORVU2Hr1G004170.4 , HORVU2Hr1G004170.5 , HORVU2Hr1G116390.1 , HORVU1Hr1G089540.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3
Wheat TraesCS2B02G048400 , TraesCS7B02G462200 , TraesCS2B02G038700 , TraesCS1B02G040200 , TraesCS2B02G558400 , TraesCS2A02G035300 , TraesCS2B02G558400 , TraesCS2A02G025600 , TraesCS2D02G027900 , TraesCS2B02G613100 , TraesCS5D02G488600 , TraesCS2D02G027700 , TraesCS2A02G025700 , TraesCS2B02G038600 , TraesCS2D02G034500 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS5D02G488700 , TraesCS2D02G530600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G374150 - -
2 Sobic.004G006966 - -
3 Sobic.004G006966 - -
4 Sobic.004G006966 - -
5 Sobic.004G006966 - -
6 Sobic.004G006966 - -
7 Sobic.009G197700 expressed protein -
8 Sobic.010G016800 - -
9 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
10 Sobic.009G061300 - -
11 Sobic.002G182850 - -
12 Sobic.008G006500 zinc knuckle family protein, expressed -
13 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
14 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
15 Sobic.003G216000 pleiotropic drug resistance protein, putative, expressed -
16 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
17 Sobic.010G098100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
18 Sobic.005G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@laccase-15 precursor, putative, expressed K05909: laccase
19 Sobic.004G004700 - -
20 Sobic.006G100400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic005G136800 Sobic005G136800 Sobic003G374150 Sobic003G374150 Sobic005G136800--Sobic003G374150 Sobic004G006966 Sobic004G006966 Sobic005G136800--Sobic004G006966 Sobic009G197700 Sobic009G197700 Sobic005G136800--Sobic009G197700 Sobic010G016800 Sobic010G016800 Sobic005G136800--Sobic010G016800 Sobic001G483500 Sobic001G483500 Sobic005G136800--Sobic001G483500 Sobic003G374150--Sobic005G136800 Sobic003G374150--Sobic004G006966 Sobic003G374150--Sobic009G197700 Sobic003G374150--Sobic010G016800 Sobic003G374150--Sobic001G483500 Sobic004G006966--Sobic004G006966 Sobic004G006966--Sobic003G374150 Sobic004G006966--Sobic005G136800 Sobic004G006966--Sobic010G016800 Sobic004G006966--Sobic001G483500 Sobic002G182850 Sobic002G182850 Sobic004G006966--Sobic002G182850 Sobic009G197700--Sobic005G136800 Sobic009G197700--Sobic003G374150 Sobic009G197700--Sobic004G006966 Sobic001G251900 Sobic001G251900 Sobic009G197700--Sobic001G251900 Sobic001G432550 Sobic001G432550 Sobic009G197700--Sobic001G432550 Sobic010G016800--Sobic004G006966 Sobic001G101400 Sobic001G101400 Sobic010G016800--Sobic001G101400 Sobic010G016800--Sobic003G374150 Sobic010G016800--Sobic001G483500 Sobic010G016800--Sobic005G136800 Sobic010G098100 Sobic010G098100 Sobic001G483500--Sobic010G098100 Sobic005G151700 Sobic005G151700 Sobic001G483500--Sobic005G151700 Sobic001G483500--Sobic004G006966 Sobic001G483500--Sobic001G101400 Sobic001G483500--Sobic001G251900
Octagon: transcription factors


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