Gene annotation
| Transcriptome id | Sobic.005G215300.1 |
|---|---|
| Synonym | Sb05g026630, LAC7 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) laccase-15 precursor, putative, expressed |
| UniProt | C5Y7Y2 |
| Pfam | PF00394 PF07731 PF07732 |
| Panther DB | PTHR11709 PTHR11709:SF119 |
| NCBI CDD | KOG1263; Multicopper oxidases |
| KEGG Orthology | K05909; laccase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0005507copper ion binding |
Orthologs (automatic annotation)
| TAIR | AT3G09220 : laccase 7 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g20610.1 : laccase-15 precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029134 , Zm00025a057137 |
| Brachypodium | KQJ93028 , KQJ99779 , KQJ87542 |
| Barley | HORVU2Hr1G002440.21 , HORVU2Hr1G002440.23 , HORVU2Hr1G002440.22 , HORVU2Hr1G002440.24 , HORVU2Hr1G002440.8 , HORVU2Hr1G002440.9 , HORVU2Hr1G002440.6 , HORVU2Hr1G002440.5 , HORVU2Hr1G002440.2 , HORVU2Hr1G002440.1 , HORVU2Hr1G002440.14 , HORVU2Hr1G002440.15 , HORVU2Hr1G002440.16 , HORVU2Hr1G002440.17 , HORVU2Hr1G002440.10 , HORVU2Hr1G002440.11 , HORVU2Hr1G002440.13 , HORVU2Hr1G002440.18 , HORVU2Hr1G002440.19 |
| Wheat | TraesCS6B02G414100 , TraesCS4A02G429700 , TraesCS4A02G429700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G101400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed | - |
| 2 | Sobic.010G016800 | - | - |
| 3 | Sobic.009G061300 | - | - |
| 4 | Sobic.004G006966 | - | - |
| 5 | Sobic.004G006966 | - | - |
| 6 | Sobic.004G006966 | - | - |
| 7 | Sobic.004G006966 | - | - |
| 8 | Sobic.004G006966 | - | - |
| 9 | Sobic.001G483500 | DUF567 domain containing protein, putative, expressed | - |
| 10 | Sobic.003G216000 | pleiotropic drug resistance protein, putative, expressed | - |
| 11 | Sobic.005G137400 | - | - |
| 12 | Sobic.003G374150 | - | - |
| 13 | Sobic.001G251900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed | - |
| 14 | Sobic.002G011600 | NB-ARC domain containing protein, expressed | - |
| 15 | Sobic.005G136800 | only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 16 | Sobic.004G004700 | - | - |
| 17 | Sobic.004G175900 | protein transport protein Sec61 subunit alpha, putative, expressed | K10956: protein transport protein SEC61 subunit alpha |
| 18 | Sobic.001G212000 | GEM, putative, expressed | - |
| 19 | Sobic.005G152100 | aminotransferase, classes I and II, domain containing protein, expressed | K00815: tyrosine aminotransferase |
| 20 | Sobic.004G246200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed | K00207: dihydropyrimidine dehydrogenase (NADP+) |
Gene co-expression network
Octagon: transcription factors
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