Gene annotation
Transcriptome id Sobic.004G175900.2
Synonym Sb04g022600
Functional annotation protein transport protein Sec61 subunit alpha, putative, expressed
UniProt A0A194YRI7
Pfam PF10559 PF00344
Panther DB PTHR10906
NCBI CDD KOG1373; Transport protein Sec61, alpha subunit
KEGG Orthology K10956; protein transport protein SEC61 subunit alpha
Gene Ontology GO:0016020; membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT2G34250 : SecY protein transport family protein
RAP-DB (Rice) LOC_Os03g11440.1 : protein transport protein Sec61 subunit alpha, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@laccase-15 precursor, putative, expressed K05909: laccase
2 Sobic.005G126200 Leucine-rich repeat protein 1(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
3 Sobic.005G137400 - -
4 Sobic.002G013400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G011600 NB-ARC domain containing protein, expressed -
6 Sobic.003G210601 - -
7 Sobic.001G145600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thaumatin family domain containing protein, expressed -
8 Sobic.008G182800 thaumatin, putative, expressed -
9 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
10 Sobic.008G182600 thaumatin, putative, expressed -
11 Sobic.006G117400 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
12 Sobic.009G073500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.009G061300 - -
14 Sobic.005G145950 - -
15 Sobic.004G006966 - -
16 Sobic.004G006966 - -
17 Sobic.004G006966 - -
18 Sobic.004G006966 - -
19 Sobic.004G006966 - -
20 Sobic.002G065800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic004G175900 Sobic004G175900 Sobic005G215300 Sobic005G215300 Sobic004G175900--Sobic005G215300 Sobic005G126200 Sobic005G126200 Sobic004G175900--Sobic005G126200 Sobic005G137400 Sobic005G137400 Sobic004G175900--Sobic005G137400 Sobic002G013400 Sobic002G013400 Sobic004G175900--Sobic002G013400 Sobic002G011600 Sobic002G011600 Sobic004G175900--Sobic002G011600 Sobic003G210601 Sobic003G210601 Sobic004G175900--Sobic003G210601 Sobic001G145600 Sobic001G145600 Sobic004G175900--Sobic001G145600 Sobic008G182800 Sobic008G182800 Sobic004G175900--Sobic008G182800 Sobic001G101400 Sobic001G101400 Sobic004G175900--Sobic001G101400 Sobic005G215300--Sobic001G101400 Sobic010G016800 Sobic010G016800 Sobic005G215300--Sobic010G016800 Sobic009G061300 Sobic009G061300 Sobic005G215300--Sobic009G061300 Sobic004G006966 Sobic004G006966 Sobic005G215300--Sobic004G006966 Sobic001G483500 Sobic001G483500 Sobic005G215300--Sobic001G483500 Sobic005G131700 Sobic005G131700 Sobic005G126200--Sobic005G131700 Sobic008G182600 Sobic008G182600 Sobic005G126200--Sobic008G182600 Sobic009G073500 Sobic009G073500 Sobic005G126200--Sobic009G073500 Sobic005G126200--Sobic008G182800 Sobic006G226800 Sobic006G226800 Sobic005G126200--Sobic006G226800 Sobic003G031100 Sobic003G031100 Sobic005G126200--Sobic003G031100 Sobic001G145700 Sobic001G145700 Sobic005G126200--Sobic001G145700 Sobic006G117400 Sobic006G117400 Sobic005G126200--Sobic006G117400 Sobic009G181200 Sobic009G181200 Sobic005G126200--Sobic009G181200 Sobic004G304200 Sobic004G304200 Sobic005G137400--Sobic004G304200 Sobic003G216000 Sobic003G216000 Sobic005G137400--Sobic003G216000 Sobic005G137400--Sobic005G215300 Sobic002G098200 Sobic002G098200 Sobic005G137400--Sobic002G098200 Sobic004G169700 Sobic004G169700 Sobic005G137400--Sobic004G169700 Sobic005G137400--Sobic001G101400 Sobic005G137400--Sobic002G011600 Sobic005G137400--Sobic002G013400 Sobic005G151700 Sobic005G151700 Sobic005G137400--Sobic005G151700 Sobic002G013400--Sobic005G137400 Sobic010G230800 Sobic010G230800 Sobic002G013400--Sobic010G230800 Sobic002G013400--Sobic004G304200 Sobic002G013400--Sobic002G098200 Sobic010G230900 Sobic010G230900 Sobic002G013400--Sobic010G230900 Sobic005G169200 Sobic005G169200 Sobic002G013400--Sobic005G169200 Sobic002G013400--Sobic005G126200 Sobic002G013400--Sobic002G011600 Sobic002G013400--Sobic003G216000 Sobic009G029600 Sobic009G029600 Sobic002G011600--Sobic009G029600 Sobic001G280200 Sobic001G280200 Sobic002G011600--Sobic001G280200 Sobic006G030700 Sobic006G030700 Sobic002G011600--Sobic006G030700 Sobic002G011600--Sobic005G151700 Sobic007G187300 Sobic007G187300 Sobic002G011600--Sobic007G187300 Sobic005G018500 Sobic005G018500 Sobic002G011600--Sobic005G018500 Sobic001G249300 Sobic001G249300 Sobic002G011600--Sobic001G249300 Sobic009G211400 Sobic009G211400 Sobic002G011600--Sobic009G211400 Sobic010G098100 Sobic010G098100 Sobic002G011600--Sobic010G098100 Sobic003G210601--Sobic005G215300 Sobic003G210601--Sobic004G175900 Sobic003G210601--Sobic009G181200 Sobic003G210601--Sobic001G145600 Sobic010G047800 Sobic010G047800 Sobic003G210601--Sobic010G047800 Sobic003G216232 Sobic003G216232 Sobic003G210601--Sobic003G216232 Sobic003G210601--Sobic006G117400 Sobic003G210601--Sobic008G182600 Sobic003G210601--Sobic002G013400 Sobic001G145600--Sobic002G011600 Sobic001G145600--Sobic001G145700 Sobic006G132500 Sobic006G132500 Sobic001G145600--Sobic006G132500 Sobic003G244600 Sobic003G244600 Sobic001G145600--Sobic003G244600 Sobic001G145600--Sobic006G030700 Sobic008G182300 Sobic008G182300 Sobic001G145600--Sobic008G182300 Sobic001G145600--Sobic005G018500 Sobic009G226300 Sobic009G226300 Sobic001G145600--Sobic009G226300 Sobic001G145600--Sobic009G181200 Sobic008G182800--Sobic008G182600 Sobic008G182800--Sobic005G169200 Sobic008G182400 Sobic008G182400 Sobic008G182800--Sobic008G182400 Sobic008G182800--Sobic009G073500 Sobic008G182800--Sobic006G117400 Sobic002G065800 Sobic002G065800 Sobic008G182800--Sobic002G065800 Sobic010G231000 Sobic010G231000 Sobic008G182800--Sobic010G231000 Sobic002G065500 Sobic002G065500 Sobic008G182800--Sobic002G065500 Sobic002G065700 Sobic002G065700 Sobic008G182800--Sobic002G065700 Sobic001G101400--Sobic001G483500 Sobic001G101400--Sobic010G016800 Sobic001G101400--Sobic005G215300 Sobic001G212000 Sobic001G212000 Sobic001G101400--Sobic001G212000 Sobic001G101400--Sobic004G006966
Octagon: transcription factors


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