Gene annotation
Transcriptome id Sobic.005G145950.1
Synonym -
Functional annotation -
UniProt A0A1Z5RIX8
Pfam PF00098
Panther DB PTHR23002 PTHR23002:SF63
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G43590 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os04g45890.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G065800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
2 Sobic.001G311866 - -
3 Sobic.001G099400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@proton-dependent oligopeptide transport, putative, expressed -
4 Sobic.001G291600 - -
5 Sobic.008G182400 thaumatin, putative, expressed -
6 Sobic.010G140200 AP2 domain containing protein, expressed -
7 Sobic.005G126100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
8 Sobic.002G065500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed -
9 Sobic.004G104500 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G246300 MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
11 Sobic.004G197100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
12 Sobic.009G073500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.008G182800 thaumatin, putative, expressed -
14 Sobic.002G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed -
15 Sobic.005G131400 - -
16 Sobic.010G172800 down-regulated TF in developmental senescence(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.003G035801 - -
18 Sobic.002G022900 OsWAK92 - OsWAK receptor-like protein kinase, expressed K04730: interleukin-1 receptor-associated kinase 1
19 Sobic.010G231000 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
20 Sobic.006G117400 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase


Gene co-expression network
sample Sobic005G145950 Sobic005G145950 Sobic002G065800 Sobic002G065800 Sobic005G145950--Sobic002G065800 Sobic001G311866 Sobic001G311866 Sobic005G145950--Sobic001G311866 Sobic001G099400 Sobic001G099400 Sobic005G145950--Sobic001G099400 Sobic001G291600 Sobic001G291600 Sobic005G145950--Sobic001G291600 Sobic008G182400 Sobic008G182400 Sobic005G145950--Sobic008G182400 Sobic010G140200 Sobic010G140200 Sobic005G145950--Sobic010G140200 Sobic005G126100 Sobic005G126100 Sobic005G145950--Sobic005G126100 Sobic002G065500 Sobic002G065500 Sobic005G145950--Sobic002G065500 Sobic004G104500 Sobic004G104500 Sobic005G145950--Sobic004G104500 Sobic002G065800--Sobic002G065500 Sobic002G065800--Sobic008G182400 Sobic002G065800--Sobic001G099400 Sobic002G065800--Sobic005G126100 Sobic002G065600 Sobic002G065600 Sobic002G065800--Sobic002G065600 Sobic002G065800--Sobic005G145950 Sobic004G197100 Sobic004G197100 Sobic002G065800--Sobic004G197100 Sobic010G172800 Sobic010G172800 Sobic002G065800--Sobic010G172800 Sobic002G065800--Sobic010G140200 Sobic001G311866--Sobic005G145950 Sobic001G311866--Sobic002G065800 Sobic001G311866--Sobic004G197100 Sobic001G311866--Sobic001G099400 Sobic007G077832 Sobic007G077832 Sobic001G311866--Sobic007G077832 Sobic001G311866--Sobic001G291600 Sobic001G311866--Sobic008G182400 Sobic001G311866--Sobic005G126100 Sobic001G311866--Sobic002G065500 Sobic001G099400--Sobic002G065800 Sobic001G099400--Sobic008G182400 Sobic001G099400--Sobic002G065500 Sobic001G099400--Sobic002G065600 Sobic001G099400--Sobic010G172800 Sobic001G099400--Sobic005G126100 Sobic006G117400 Sobic006G117400 Sobic001G099400--Sobic006G117400 Sobic001G099400--Sobic005G145950 Sobic001G099400--Sobic004G197100 Sobic009G073500 Sobic009G073500 Sobic001G291600--Sobic009G073500 Sobic001G291600--Sobic005G145950 Sobic001G291600--Sobic001G099400 Sobic001G291600--Sobic002G065800 Sobic010G240400 Sobic010G240400 Sobic001G291600--Sobic010G240400 Sobic001G291600--Sobic010G172800 Sobic001G291600--Sobic005G126100 Sobic008G146700 Sobic008G146700 Sobic001G291600--Sobic008G146700 Sobic001G291600--Sobic001G311866 Sobic008G182400--Sobic002G065500 Sobic008G182400--Sobic002G065800 Sobic008G182400--Sobic002G065600 Sobic008G182400--Sobic005G126100 Sobic008G182400--Sobic001G099400 Sobic008G182400--Sobic010G172800 Sobic008G182400--Sobic004G197100 Sobic010G231000 Sobic010G231000 Sobic008G182400--Sobic010G231000 Sobic008G182400--Sobic006G117400 Sobic010G140200--Sobic002G065800 Sobic010G140200--Sobic002G065500 Sobic010G140200--Sobic008G182400 Sobic010G140200--Sobic001G099400 Sobic003G035801 Sobic003G035801 Sobic010G140200--Sobic003G035801 Sobic010G140200--Sobic005G126100 Sobic010G140200--Sobic002G065600 Sobic010G140200--Sobic005G145950 Sobic010G140200--Sobic010G172800 Sobic005G126100--Sobic002G065500 Sobic005G126100--Sobic010G172800 Sobic005G126100--Sobic002G065800 Sobic005G126100--Sobic008G182400 Sobic005G126100--Sobic010G231000 Sobic005G126100--Sobic002G065600 Sobic005G126100--Sobic001G099400 Sobic005G126100--Sobic004G197100 Sobic002G065700 Sobic002G065700 Sobic005G126100--Sobic002G065700 Sobic002G065500--Sobic002G065600 Sobic002G065500--Sobic008G182400 Sobic002G065500--Sobic002G065800 Sobic002G065500--Sobic005G126100 Sobic002G065500--Sobic004G197100 Sobic002G065500--Sobic001G099400 Sobic002G065500--Sobic002G065700 Sobic002G065500--Sobic010G172800 Sobic002G065500--Sobic010G231000 Sobic004G104500--Sobic005G145950 Sobic004G104500--Sobic002G065800 Sobic004G104500--Sobic001G311866 Sobic004G104500--Sobic001G099400 Sobic004G104500--Sobic001G291600 Sobic004G104500--Sobic008G182400 Sobic004G104500--Sobic005G126100 Sobic004G104500--Sobic010G140200 Sobic004G104500--Sobic002G065500
Octagon: transcription factors


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