Gene annotation
Transcriptome id Sobic.010G172800.1
Synonym Sb10g022530
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5Z526
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF150
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56960 : basic helix-loop-helix (bHLH) DNA-binding family protein
RAP-DB (Rice) LOC_Os06g37410.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051122
Brachypodium -
Barley HORVU7Hr1G087150.1
Wheat TraesCS7D02G360600 , TraesCS7B02G265900 , TraesCS7A02G362500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G126100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.002G065500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed -
3 Sobic.008G182400 thaumatin, putative, expressed -
4 Sobic.002G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed -
5 Sobic.010G231000 Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
6 Sobic.001G099400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@proton-dependent oligopeptide transport, putative, expressed -
7 Sobic.002G065800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
8 Sobic.003G035801 - -
9 Sobic.006G117400 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
10 Sobic.002G065700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.004G197100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
12 Sobic.009G073500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.010G140200 AP2 domain containing protein, expressed -
14 Sobic.010G240400 beta-expansin precursor, putative, expressed -
15 Sobic.002G022900 OsWAK92 - OsWAK receptor-like protein kinase, expressed K04730: interleukin-1 receptor-associated kinase 1
16 Sobic.007G032600 verticillium wilt disease resistance protein, putative, expressed -
17 Sobic.008G182800 thaumatin, putative, expressed -
18 Sobic.001G291600 - -
19 Sobic.010G230800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@O-methyltransferase family 2 protein (At)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
20 Sobic.010G020200 SCP-like extracellular protein, expressed -


Gene co-expression network
sample Sobic010G172800 Sobic010G172800 Sobic005G126100 Sobic005G126100 Sobic010G172800--Sobic005G126100 Sobic002G065500 Sobic002G065500 Sobic010G172800--Sobic002G065500 Sobic008G182400 Sobic008G182400 Sobic010G172800--Sobic008G182400 Sobic002G065600 Sobic002G065600 Sobic010G172800--Sobic002G065600 Sobic010G231000 Sobic010G231000 Sobic010G172800--Sobic010G231000 Sobic001G099400 Sobic001G099400 Sobic010G172800--Sobic001G099400 Sobic002G065800 Sobic002G065800 Sobic010G172800--Sobic002G065800 Sobic003G035801 Sobic003G035801 Sobic010G172800--Sobic003G035801 Sobic006G117400 Sobic006G117400 Sobic010G172800--Sobic006G117400 Sobic005G126100--Sobic002G065500 Sobic005G126100--Sobic010G172800 Sobic005G126100--Sobic002G065800 Sobic005G126100--Sobic008G182400 Sobic005G126100--Sobic010G231000 Sobic005G126100--Sobic002G065600 Sobic005G126100--Sobic001G099400 Sobic004G197100 Sobic004G197100 Sobic005G126100--Sobic004G197100 Sobic002G065700 Sobic002G065700 Sobic005G126100--Sobic002G065700 Sobic002G065500--Sobic002G065600 Sobic002G065500--Sobic008G182400 Sobic002G065500--Sobic002G065800 Sobic002G065500--Sobic005G126100 Sobic002G065500--Sobic004G197100 Sobic002G065500--Sobic001G099400 Sobic002G065500--Sobic002G065700 Sobic002G065500--Sobic010G172800 Sobic002G065500--Sobic010G231000 Sobic008G182400--Sobic002G065500 Sobic008G182400--Sobic002G065800 Sobic008G182400--Sobic002G065600 Sobic008G182400--Sobic005G126100 Sobic008G182400--Sobic001G099400 Sobic008G182400--Sobic010G172800 Sobic008G182400--Sobic004G197100 Sobic008G182400--Sobic010G231000 Sobic008G182400--Sobic006G117400 Sobic002G065600--Sobic002G065500 Sobic002G065600--Sobic008G182400 Sobic002G065600--Sobic002G065800 Sobic002G065600--Sobic002G065700 Sobic002G065600--Sobic005G126100 Sobic002G065600--Sobic004G197100 Sobic002G065600--Sobic010G231000 Sobic002G065600--Sobic010G172800 Sobic002G065600--Sobic006G117400 Sobic010G231000--Sobic002G065700 Sobic010G231000--Sobic005G126100 Sobic010G231000--Sobic002G065600 Sobic010G230800 Sobic010G230800 Sobic010G231000--Sobic010G230800 Sobic010G231000--Sobic002G065500 Sobic010G231000--Sobic010G172800 Sobic010G231000--Sobic008G182400 Sobic010G231000--Sobic006G117400 Sobic010G230900 Sobic010G230900 Sobic010G231000--Sobic010G230900 Sobic001G099400--Sobic002G065800 Sobic001G099400--Sobic008G182400 Sobic001G099400--Sobic002G065500 Sobic001G099400--Sobic002G065600 Sobic001G099400--Sobic010G172800 Sobic001G099400--Sobic005G126100 Sobic001G099400--Sobic006G117400 Sobic005G145950 Sobic005G145950 Sobic001G099400--Sobic005G145950 Sobic001G099400--Sobic004G197100 Sobic002G065800--Sobic002G065500 Sobic002G065800--Sobic008G182400 Sobic002G065800--Sobic001G099400 Sobic002G065800--Sobic005G126100 Sobic002G065800--Sobic002G065600 Sobic002G065800--Sobic005G145950 Sobic002G065800--Sobic004G197100 Sobic002G065800--Sobic010G172800 Sobic010G140200 Sobic010G140200 Sobic002G065800--Sobic010G140200 Sobic003G035801--Sobic010G172800 Sobic003G035801--Sobic002G065500 Sobic003G035801--Sobic002G065600 Sobic003G035801--Sobic008G182400 Sobic003G035801--Sobic002G065800 Sobic003G035801--Sobic005G126100 Sobic003G035801--Sobic001G099400 Sobic003G035801--Sobic010G140200 Sobic003G035801--Sobic004G197100 Sobic006G117400--Sobic002G065500 Sobic006G117400--Sobic002G065600 Sobic006G117400--Sobic008G182400 Sobic006G117400--Sobic002G065700 Sobic006G117400--Sobic001G099400 Sobic006G117400--Sobic010G172800 Sobic008G182800 Sobic008G182800 Sobic006G117400--Sobic008G182800 Sobic006G117400--Sobic010G231000 Sobic006G117400--Sobic002G065800
Octagon: transcription factors


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