Gene annotation
Transcriptome id Sobic.003G216000.1
Synonym ATABCG40, ABCG40, Sb03g027490, PDR12, ATPDR12
Functional annotation pleiotropic drug resistance protein, putative, expressed
UniProt A0A1B6Q4K7
Pfam PF14510 PF08370 PF00005 PF01061
Panther DB PTHR19241 PTHR19241:SF273
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G15520 : pleiotropic drug resistance 12
RAP-DB (Rice) LOC_Os01g42380.1 : pleiotropic drug resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a028685 , Zm00025a028684 , Zm00025a038480 , Zm00025a034596
Brachypodium KQJ93976 , KQJ93977 , PNT72368 , PNT75619 , PNT75618 , PNT75624 , PNT75622 , PNT75623 , PNT75620 , PNT75621 , KQK03837 , KQK08670 , KQJ89875 , KQJ89876 , KQK08666
Barley HORVU3Hr1G053350.9 , HORVU3Hr1G053350.8 , HORVU3Hr1G071470.5 , HORVU3Hr1G071470.1 , HORVU4Hr1G017090.1 , HORVU7Hr1G092510.23 , HORVU7Hr1G092510.22 , HORVU7Hr1G092510.21 , HORVU7Hr1G092510.27 , HORVU7Hr1G092510.26 , HORVU7Hr1G092510.25 , HORVU7Hr1G092510.24 , HORVU7Hr1G092510.29 , HORVU7Hr1G092510.28 , HORVU7Hr1G092380.51 , HORVU7Hr1G092380.50 , HORVU7Hr1G092380.53 , HORVU7Hr1G092380.54 , HORVU7Hr1G092510.30 , HORVU7Hr1G092510.31 , HORVU7Hr1G092510.32 , HORVU7Hr1G092510.33 , HORVU7Hr1G092510.34 , HORVU7Hr1G092510.35 , HORVU7Hr1G092510.36 , HORVU7Hr1G092510.37 , HORVU7Hr1G092510.38 , HORVU7Hr1G092510.39 , HORVU7Hr1G092380.46 , HORVU7Hr1G092380.44 , HORVU7Hr1G092380.45 , HORVU7Hr1G092380.42 , HORVU7Hr1G092380.48 , HORVU7Hr1G092380.49 , HORVU3Hr1G053380.8 , HORVU3Hr1G053380.9 , HORVU3Hr1G053380.2 , HORVU3Hr1G053380.3 , HORVU3Hr1G053380.1 , HORVU3Hr1G053380.6 , HORVU3Hr1G053380.7 , HORVU3Hr1G053380.4 , HORVU3Hr1G053380.5 , HORVU7Hr1G092510.18 , HORVU7Hr1G092510.12 , HORVU7Hr1G092510.13 , HORVU7Hr1G092510.10 , HORVU7Hr1G092510.16 , HORVU7Hr1G092510.17 , HORVU7Hr1G092510.15 , HORVU3Hr1G053380.10 , HORVU3Hr1G053380.11 , HORVU3Hr1G053380.12 , HORVU3Hr1G053380.13 , HORVU3Hr1G053380.14 , HORVU3Hr1G053380.15 , HORVU3Hr1G053380.16 , HORVU7Hr1G092380.19 , HORVU7Hr1G092380.40 , HORVU7Hr1G092380.47 , HORVU7Hr1G092380.43 , HORVU7Hr1G092380.5 , HORVU7Hr1G092380.7 , HORVU7Hr1G092380.6 , HORVU7Hr1G092380.9 , HORVU7Hr1G092380.8 , HORVU7Hr1G092380.41 , HORVU5Hr1G056280.11 , HORVU5Hr1G056280.12 , HORVU5Hr1G056280.13 , HORVU5Hr1G056280.14 , HORVU5Hr1G056280.15 , HORVU7Hr1G092510.41 , HORVU7Hr1G092510.40 , HORVU7Hr1G092510.43 , HORVU7Hr1G092510.42 , HORVU7Hr1G092510.44 , HORVU7Hr1G092510.47 , HORVU7Hr1G092510.46 , HORVU3Hr1G053350.28 , HORVU3Hr1G053350.29 , HORVU3Hr1G053350.26 , HORVU3Hr1G053350.27 , HORVU5Hr1G056280.24 , HORVU5Hr1G056280.27 , HORVU5Hr1G056280.26 , HORVU5Hr1G056280.21 , HORVU5Hr1G056280.20 , HORVU5Hr1G056280.29 , HORVU3Hr1G053350.40 , HORVU5Hr1G056280.38 , HORVU5Hr1G056280.39 , HORVU5Hr1G056280.30 , HORVU5Hr1G056280.31 , HORVU5Hr1G056280.36 , HORVU5Hr1G056280.37 , HORVU5Hr1G056280.35 , HORVU3Hr1G053350.39 , HORVU3Hr1G053350.38 , HORVU3Hr1G053350.37 , HORVU3Hr1G053350.36 , HORVU3Hr1G053350.35 , HORVU3Hr1G053350.34 , HORVU3Hr1G053350.33 , HORVU3Hr1G053350.32 , HORVU3Hr1G053350.31 , HORVU3Hr1G053350.30 , HORVU5Hr1G056280.43 , HORVU7Hr1G092380.3 , HORVU7Hr1G092380.2 , HORVU7Hr1G092380.33 , HORVU7Hr1G092380.32 , HORVU7Hr1G092380.31 , HORVU7Hr1G092380.30 , HORVU7Hr1G092380.37 , HORVU7Hr1G092380.36 , HORVU7Hr1G092380.35 , HORVU7Hr1G092380.34 , HORVU3Hr1G053350.25 , HORVU7Hr1G092380.39 , HORVU7Hr1G092380.38 , HORVU3Hr1G053350.20 , HORVU3Hr1G053350.21 , HORVU3Hr1G053350.22 , HORVU3Hr1G053350.23 , HORVU3Hr1G071470.11 , HORVU3Hr1G053350.11 , HORVU3Hr1G053350.10 , HORVU3Hr1G053350.13 , HORVU3Hr1G053350.12 , HORVU3Hr1G053350.15 , HORVU3Hr1G053350.14 , HORVU3Hr1G053350.17 , HORVU3Hr1G053350.16 , HORVU3Hr1G053350.19 , HORVU3Hr1G053350.18 , HORVU7Hr1G092380.20 , HORVU7Hr1G092380.21 , HORVU7Hr1G092380.24 , HORVU7Hr1G092380.25 , HORVU7Hr1G092380.26 , HORVU7Hr1G092380.28 , HORVU7Hr1G092380.29 , HORVU3Hr1G053350.5 , HORVU3Hr1G053350.4 , HORVU3Hr1G053350.7 , HORVU3Hr1G053350.6 , HORVU3Hr1G053350.1 , HORVU3Hr1G053350.3 , HORVU3Hr1G053350.2 , HORVU7Hr1G092380.15 , HORVU7Hr1G092380.14 , HORVU7Hr1G092380.17 , HORVU7Hr1G092380.16 , HORVU7Hr1G092380.11 , HORVU7Hr1G092380.10 , HORVU7Hr1G092380.13 , HORVU7Hr1G092380.12 , HORVU7Hr1G092380.18 , HORVU5Hr1G056280.6 , HORVU5Hr1G056280.7 , HORVU5Hr1G056280.8 , HORVU7Hr1G092510.1 , HORVU7Hr1G092510.2 , HORVU7Hr1G092510.3 , HORVU7Hr1G092510.4 , HORVU7Hr1G092510.5 , HORVU7Hr1G092510.6 , HORVU7Hr1G092510.7 , HORVU7Hr1G092510.8 , HORVU7Hr1G092510.9
Wheat TraesCS2D02G130000 , TraesCS3D02G272200 , TraesCS2A02G127800 , TraesCS7B02G292700 , TraesCS7B02G292700 , TraesCS3A02G218000 , TraesCS3A02G218000 , TraesCS3A02G218000 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS3B02G248500 , TraesCS2A02G483300 , TraesCS7A02G391100 , TraesCS7A02G391100 , TraesCS3D02G272200 , TraesCS5D02G190600 , TraesCS5D02G190600 , TraesCS3D02G234300 , TraesCS3D02G234300 , TraesCS3B02G248400 , TraesCS5D02G190600 , TraesCS6A02G178500 , TraesCS6D02G166100 , TraesCS3A02G217900 , TraesCS3A02G272800 , TraesCS3A02G272800 , TraesCS5A02G185500 , TraesCS5A02G185500 , TraesCS3D02G234400 , TraesCS6B02G205900
Populus PNT46280 , PNT46279


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
2 Sobic.004G304200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
3 Sobic.003G251301 - -
4 Sobic.010G170550 - -
5 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
6 Sobic.004G006966 - -
7 Sobic.004G006966 - -
8 Sobic.004G006966 - -
9 Sobic.004G006966 - -
10 Sobic.004G006966 - -
11 Sobic.002G058200 SAM dependent carboxyl methyltransferase, putative, expressed -
12 Sobic.005G137400 - -
13 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
14 Sobic.003G374150 - -
15 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
16 Sobic.005G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@laccase-15 precursor, putative, expressed K05909: laccase
17 Sobic.002G011600 NB-ARC domain containing protein, expressed -
18 Sobic.005G136800 only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
19 Sobic.010G016800 - -
20 Sobic.004G169700 - -


Gene co-expression network
sample Sobic003G216000 Sobic003G216000 Sobic005G151700 Sobic005G151700 Sobic003G216000--Sobic005G151700 Sobic004G304200 Sobic004G304200 Sobic003G216000--Sobic004G304200 Sobic003G251301 Sobic003G251301 Sobic003G216000--Sobic003G251301 Sobic010G170550 Sobic010G170550 Sobic003G216000--Sobic010G170550 Sobic001G483500 Sobic001G483500 Sobic003G216000--Sobic001G483500 Sobic004G006966 Sobic004G006966 Sobic003G216000--Sobic004G006966 Sobic010G098100 Sobic010G098100 Sobic005G151700--Sobic010G098100 Sobic005G151700--Sobic001G483500 Sobic007G187300 Sobic007G187300 Sobic005G151700--Sobic007G187300 Sobic003G259200 Sobic003G259200 Sobic005G151700--Sobic003G259200 Sobic003G219600 Sobic003G219600 Sobic005G151700--Sobic003G219600 Sobic009G211400 Sobic009G211400 Sobic005G151700--Sobic009G211400 Sobic001G249300 Sobic001G249300 Sobic005G151700--Sobic001G249300 Sobic005G018500 Sobic005G018500 Sobic005G151700--Sobic005G018500 Sobic009G029600 Sobic009G029600 Sobic005G151700--Sobic009G029600 Sobic004G304200--Sobic003G216000 Sobic005G137400 Sobic005G137400 Sobic004G304200--Sobic005G137400 Sobic004G169700 Sobic004G169700 Sobic004G304200--Sobic004G169700 Sobic002G098200 Sobic002G098200 Sobic004G304200--Sobic002G098200 Sobic004G246200 Sobic004G246200 Sobic004G304200--Sobic004G246200 Sobic003G366400 Sobic003G366400 Sobic004G304200--Sobic003G366400 Sobic004G304200--Sobic005G151700 Sobic004G260000 Sobic004G260000 Sobic004G304200--Sobic004G260000 Sobic004G074500 Sobic004G074500 Sobic004G304200--Sobic004G074500 Sobic003G251301--Sobic003G216000 Sobic002G058200 Sobic002G058200 Sobic003G251301--Sobic002G058200 Sobic003G251301--Sobic010G170550 Sobic003G251301--Sobic004G006966 Sobic009G061300 Sobic009G061300 Sobic003G251301--Sobic009G061300 Sobic003G269700 Sobic003G269700 Sobic010G170550--Sobic003G269700 Sobic010G170550--Sobic009G029600 Sobic004G255000 Sobic004G255000 Sobic010G170550--Sobic004G255000 Sobic010G170550--Sobic003G219600 Sobic010G170550--Sobic001G483500 Sobic010G170550--Sobic005G151700 Sobic010G170550--Sobic003G216000 Sobic006G100400 Sobic006G100400 Sobic010G170550--Sobic006G100400 Sobic001G251900 Sobic001G251900 Sobic010G170550--Sobic001G251900 Sobic001G483500--Sobic010G098100 Sobic001G483500--Sobic005G151700 Sobic001G483500--Sobic004G006966 Sobic001G101400 Sobic001G101400 Sobic001G483500--Sobic001G101400 Sobic001G483500--Sobic001G251900 Sobic004G006966--Sobic004G006966 Sobic003G374150 Sobic003G374150 Sobic004G006966--Sobic003G374150 Sobic005G136800 Sobic005G136800 Sobic004G006966--Sobic005G136800 Sobic010G016800 Sobic010G016800 Sobic004G006966--Sobic010G016800 Sobic004G006966--Sobic001G483500 Sobic002G182850 Sobic002G182850 Sobic004G006966--Sobic002G182850
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.