Gene annotation
Transcriptome id Sobic.004G304200.1
Synonym Sb04g033730
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
short-chain dehydrogenase/reductase, putative, expressed
UniProt C5XSQ4
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF376
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G01800 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g44950.1 : short-chain dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G216000 pleiotropic drug resistance protein, putative, expressed -
2 Sobic.005G137400 - -
3 Sobic.004G169700 - -
4 Sobic.002G098200 expressed protein -
5 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
6 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
7 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
8 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
10 Sobic.002G013400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
12 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
13 Sobic.002G100700 expressed protein -
14 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
15 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
16 Sobic.003G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
17 Sobic.002G058200 SAM dependent carboxyl methyltransferase, putative, expressed -
18 Sobic.005G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@laccase-15 precursor, putative, expressed K05909: laccase
19 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G401200 selenium-binding protein, putative, expressed K17285: methanethiol oxidase


Gene co-expression network
sample Sobic004G304200 Sobic004G304200 Sobic003G216000 Sobic003G216000 Sobic004G304200--Sobic003G216000 Sobic005G137400 Sobic005G137400 Sobic004G304200--Sobic005G137400 Sobic004G169700 Sobic004G169700 Sobic004G304200--Sobic004G169700 Sobic002G098200 Sobic002G098200 Sobic004G304200--Sobic002G098200 Sobic004G246200 Sobic004G246200 Sobic004G304200--Sobic004G246200 Sobic003G366400 Sobic003G366400 Sobic004G304200--Sobic003G366400 Sobic005G151700 Sobic005G151700 Sobic004G304200--Sobic005G151700 Sobic004G260000 Sobic004G260000 Sobic004G304200--Sobic004G260000 Sobic004G074500 Sobic004G074500 Sobic004G304200--Sobic004G074500 Sobic003G216000--Sobic005G151700 Sobic003G216000--Sobic004G304200 Sobic003G251301 Sobic003G251301 Sobic003G216000--Sobic003G251301 Sobic010G170550 Sobic010G170550 Sobic003G216000--Sobic010G170550 Sobic001G483500 Sobic001G483500 Sobic003G216000--Sobic001G483500 Sobic004G006966 Sobic004G006966 Sobic003G216000--Sobic004G006966 Sobic005G137400--Sobic004G304200 Sobic005G137400--Sobic003G216000 Sobic005G215300 Sobic005G215300 Sobic005G137400--Sobic005G215300 Sobic005G137400--Sobic002G098200 Sobic005G137400--Sobic004G169700 Sobic001G101400 Sobic001G101400 Sobic005G137400--Sobic001G101400 Sobic002G011600 Sobic002G011600 Sobic005G137400--Sobic002G011600 Sobic002G013400 Sobic002G013400 Sobic005G137400--Sobic002G013400 Sobic005G137400--Sobic005G151700 Sobic003G401200 Sobic003G401200 Sobic004G169700--Sobic003G401200 Sobic004G169700--Sobic004G260000 Sobic007G219900 Sobic007G219900 Sobic004G169700--Sobic007G219900 Sobic004G169700--Sobic004G304200 Sobic004G169700--Sobic003G216000 Sobic006G140000 Sobic006G140000 Sobic004G169700--Sobic006G140000 Sobic004G169700--Sobic003G366400 Sobic005G018500 Sobic005G018500 Sobic004G169700--Sobic005G018500 Sobic004G169700--Sobic004G246200 Sobic002G058200 Sobic002G058200 Sobic002G098200--Sobic002G058200 Sobic002G098200--Sobic004G304200 Sobic002G098200--Sobic003G216000 Sobic002G098200--Sobic005G137400 Sobic005G043600 Sobic005G043600 Sobic002G098200--Sobic005G043600 Sobic009G012900 Sobic009G012900 Sobic002G098200--Sobic009G012900 Sobic002G100700 Sobic002G100700 Sobic002G098200--Sobic002G100700 Sobic002G098200--Sobic004G169700 Sobic002G098200--Sobic002G011600 Sobic005G152100 Sobic005G152100 Sobic004G246200--Sobic005G152100 Sobic004G246200--Sobic005G018500 Sobic003G259200 Sobic003G259200 Sobic004G246200--Sobic003G259200 Sobic004G255000 Sobic004G255000 Sobic004G246200--Sobic004G255000 Sobic001G412700 Sobic001G412700 Sobic004G246200--Sobic001G412700 Sobic004G246200--Sobic004G260000 Sobic002G322900 Sobic002G322900 Sobic004G246200--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic004G246200--Sobic009G054500 Sobic008G024400 Sobic008G024400 Sobic004G246200--Sobic008G024400 Sobic003G366400--Sobic007G219900 Sobic003G366400--Sobic003G401200 Sobic002G215700 Sobic002G215700 Sobic003G366400--Sobic002G215700 Sobic003G366400--Sobic004G260000 Sobic001G227800 Sobic001G227800 Sobic003G366400--Sobic001G227800 Sobic003G366400--Sobic004G246200 Sobic003G366400--Sobic005G018500 Sobic004G101900 Sobic004G101900 Sobic003G366400--Sobic004G101900 Sobic009G211400 Sobic009G211400 Sobic003G366400--Sobic009G211400 Sobic010G098100 Sobic010G098100 Sobic005G151700--Sobic010G098100 Sobic005G151700--Sobic001G483500 Sobic007G187300 Sobic007G187300 Sobic005G151700--Sobic007G187300 Sobic005G151700--Sobic003G259200 Sobic003G219600 Sobic003G219600 Sobic005G151700--Sobic003G219600 Sobic005G151700--Sobic009G211400 Sobic001G249300 Sobic001G249300 Sobic005G151700--Sobic001G249300 Sobic005G151700--Sobic005G018500 Sobic009G029600 Sobic009G029600 Sobic005G151700--Sobic009G029600 Sobic004G260000--Sobic005G018500 Sobic004G260000--Sobic009G054500 Sobic009G226300 Sobic009G226300 Sobic004G260000--Sobic009G226300 Sobic004G260000--Sobic004G255000 Sobic004G260000--Sobic001G249300 Sobic008G062200 Sobic008G062200 Sobic004G260000--Sobic008G062200 Sobic004G260000--Sobic007G187300 Sobic004G260000--Sobic003G219600 Sobic004G260000--Sobic009G211400 Sobic003G085300 Sobic003G085300 Sobic004G074500--Sobic003G085300 Sobic002G090200 Sobic002G090200 Sobic004G074500--Sobic002G090200 Sobic004G308000 Sobic004G308000 Sobic004G074500--Sobic004G308000 Sobic007G003200 Sobic007G003200 Sobic004G074500--Sobic007G003200 Sobic004G074500--Sobic004G246200 Sobic004G074500--Sobic001G101400 Sobic010G016800 Sobic010G016800 Sobic004G074500--Sobic010G016800 Sobic001G212000 Sobic001G212000 Sobic004G074500--Sobic001G212000 Sobic004G074500--Sobic006G140000
Octagon: transcription factors


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