Gene annotation
Transcriptome id Sobic.004G074500.1,Sobic.004G074500.2
Synonym Sb04g006160
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
amino acid transporter, putative, expressed
UniProt A0A194YPB8
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF239
NCBI CDD KOG1305; Amino acid transporter protein
KEGG Orthology K14207; SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G30390 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os02g09810.1,LOC_Os02g09810.3 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a051455 , Zm00025a019396
Brachypodium KQK17592 , KQJ93774
Barley HORVU6Hr1G034900.2 , HORVU6Hr1G034900.3 , HORVU6Hr1G034900.1
Wheat TraesCS6B02G198900 , TraesCS6D02G160400 , TraesCS6A02G170700
Populus -


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cDNA sequences
Sobic.004G074500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@BBTI12 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
2 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
3 Sobic.004G308000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@EF hand family protein, putative, expressed -
4 Sobic.007G003200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
5 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
6 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
7 Sobic.010G016800 - -
8 Sobic.001G212000 GEM, putative, expressed -
9 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
10 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
12 Sobic.006G091100 expressed protein -
13 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
14 Sobic.002G057300 expressed protein -
15 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
16 Sobic.009G161401 - -
17 Sobic.001G026900 cytidine deaminase, putative, expressed -
18 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
19 Sobic.006G007800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@legume lectins beta domain containing protein, putative, expressed -
20 Sobic.005G215300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@laccase-15 precursor, putative, expressed K05909: laccase


Gene co-expression network
sample Sobic004G074500 Sobic004G074500 Sobic003G085300 Sobic003G085300 Sobic004G074500--Sobic003G085300 Sobic002G090200 Sobic002G090200 Sobic004G074500--Sobic002G090200 Sobic004G308000 Sobic004G308000 Sobic004G074500--Sobic004G308000 Sobic007G003200 Sobic007G003200 Sobic004G074500--Sobic007G003200 Sobic004G246200 Sobic004G246200 Sobic004G074500--Sobic004G246200 Sobic001G101400 Sobic001G101400 Sobic004G074500--Sobic001G101400 Sobic010G016800 Sobic010G016800 Sobic004G074500--Sobic010G016800 Sobic001G212000 Sobic001G212000 Sobic004G074500--Sobic001G212000 Sobic006G140000 Sobic006G140000 Sobic004G074500--Sobic006G140000 Sobic003G085300--Sobic004G308000 Sobic003G085300--Sobic001G212000 Sobic005G152100 Sobic005G152100 Sobic003G085300--Sobic005G152100 Sobic003G085300--Sobic004G074500 Sobic003G085300--Sobic004G246200 Sobic001G412700 Sobic001G412700 Sobic003G085300--Sobic001G412700 Sobic008G024400 Sobic008G024400 Sobic003G085300--Sobic008G024400 Sobic005G215900 Sobic005G215900 Sobic003G085300--Sobic005G215900 Sobic003G085300--Sobic001G101400 Sobic006G218300 Sobic006G218300 Sobic002G090200--Sobic006G218300 Sobic004G050000 Sobic004G050000 Sobic002G090200--Sobic004G050000 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic001G026900 Sobic001G026900 Sobic002G090200--Sobic001G026900 Sobic002G090200--Sobic004G308000 Sobic004G277000 Sobic004G277000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G249000 Sobic002G249000 Sobic002G090200--Sobic002G249000 Sobic004G308000--Sobic003G085300 Sobic002G057300 Sobic002G057300 Sobic004G308000--Sobic002G057300 Sobic004G308000--Sobic004G074500 Sobic004G308000--Sobic002G090200 Sobic004G308000--Sobic001G212000 Sobic004G308000--Sobic007G003200 Sobic009G236200 Sobic009G236200 Sobic004G308000--Sobic009G236200 Sobic001G151800 Sobic001G151800 Sobic004G308000--Sobic001G151800 Sobic004G308000--Sobic006G218300 Sobic007G003200--Sobic001G101400 Sobic007G003200--Sobic004G074500 Sobic007G003200--Sobic010G016800 Sobic007G003200--Sobic001G212000 Sobic006G261550 Sobic006G261550 Sobic007G003200--Sobic006G261550 Sobic007G003200--Sobic008G024400 Sobic007G003200--Sobic003G085300 Sobic002G209000 Sobic002G209000 Sobic007G003200--Sobic002G209000 Sobic001G483500 Sobic001G483500 Sobic007G003200--Sobic001G483500 Sobic004G246200--Sobic005G152100 Sobic005G018500 Sobic005G018500 Sobic004G246200--Sobic005G018500 Sobic003G259200 Sobic003G259200 Sobic004G246200--Sobic003G259200 Sobic004G255000 Sobic004G255000 Sobic004G246200--Sobic004G255000 Sobic004G246200--Sobic001G412700 Sobic004G260000 Sobic004G260000 Sobic004G246200--Sobic004G260000 Sobic002G322900 Sobic002G322900 Sobic004G246200--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic004G246200--Sobic009G054500 Sobic004G246200--Sobic008G024400 Sobic001G101400--Sobic001G483500 Sobic001G101400--Sobic010G016800 Sobic005G215300 Sobic005G215300 Sobic001G101400--Sobic005G215300 Sobic001G101400--Sobic001G212000 Sobic004G006966 Sobic004G006966 Sobic001G101400--Sobic004G006966 Sobic010G016800--Sobic004G006966 Sobic010G016800--Sobic001G101400 Sobic003G374150 Sobic003G374150 Sobic010G016800--Sobic003G374150 Sobic010G016800--Sobic001G483500 Sobic005G136800 Sobic005G136800 Sobic010G016800--Sobic005G136800 Sobic010G098100 Sobic010G098100 Sobic001G212000--Sobic010G098100 Sobic001G212000--Sobic003G085300 Sobic001G212000--Sobic005G152100 Sobic001G212000--Sobic001G101400 Sobic001G212000--Sobic001G483500 Sobic001G212000--Sobic001G412700 Sobic005G151700 Sobic005G151700 Sobic001G212000--Sobic005G151700 Sobic001G212000--Sobic008G024400 Sobic004G236600 Sobic004G236600 Sobic001G212000--Sobic004G236600 Sobic001G488500 Sobic001G488500 Sobic006G140000--Sobic001G488500 Sobic003G348400 Sobic003G348400 Sobic006G140000--Sobic003G348400 Sobic004G185900 Sobic004G185900 Sobic006G140000--Sobic004G185900 Sobic003G338400 Sobic003G338400 Sobic006G140000--Sobic003G338400 Sobic006G140000--Sobic001G151800 Sobic006G140000--Sobic005G215900 Sobic006G140000--Sobic003G085300 Sobic010G016400 Sobic010G016400 Sobic006G140000--Sobic010G016400 Sobic004G102400 Sobic004G102400 Sobic006G140000--Sobic004G102400
Octagon: transcription factors


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