Gene annotation
Transcriptome id Sobic.002G098200.2,Sobic.002G098200.3
Synonym Sb02g008080
Functional annotation expressed protein
UniProt C5X2T2
Pfam PF08224
Panther DB PTHR33377 PTHR33377:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g02970.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G058200 SAM dependent carboxyl methyltransferase, putative, expressed -
2 Sobic.004G304200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
3 Sobic.003G216000 pleiotropic drug resistance protein, putative, expressed -
4 Sobic.005G137400 - -
5 Sobic.005G043600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
6 Sobic.009G012900 leucine rich repeat protein, putative, expressed -
7 Sobic.002G100700 expressed protein -
8 Sobic.004G169700 - -
9 Sobic.002G011600 NB-ARC domain containing protein, expressed -
10 Sobic.005G043900 protein kinase domain containing protein, expressed -
11 Sobic.006G030700 receptor kinase, putative, expressed -
12 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
13 Sobic.002G013400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G251301 - -
16 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
17 Sobic.008G175032 - -
18 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
19 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
20 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase


Gene co-expression network
sample Sobic002G098200 Sobic002G098200 Sobic002G058200 Sobic002G058200 Sobic002G098200--Sobic002G058200 Sobic004G304200 Sobic004G304200 Sobic002G098200--Sobic004G304200 Sobic003G216000 Sobic003G216000 Sobic002G098200--Sobic003G216000 Sobic005G137400 Sobic005G137400 Sobic002G098200--Sobic005G137400 Sobic005G043600 Sobic005G043600 Sobic002G098200--Sobic005G043600 Sobic009G012900 Sobic009G012900 Sobic002G098200--Sobic009G012900 Sobic002G100700 Sobic002G100700 Sobic002G098200--Sobic002G100700 Sobic004G169700 Sobic004G169700 Sobic002G098200--Sobic004G169700 Sobic002G011600 Sobic002G011600 Sobic002G098200--Sobic002G011600 Sobic003G251301 Sobic003G251301 Sobic002G058200--Sobic003G251301 Sobic002G058200--Sobic003G216000 Sobic002G058200--Sobic009G012900 Sobic002G058200--Sobic005G043600 Sobic002G058200--Sobic002G098200 Sobic008G175032 Sobic008G175032 Sobic002G058200--Sobic008G175032 Sobic010G170550 Sobic010G170550 Sobic002G058200--Sobic010G170550 Sobic002G058200--Sobic002G011600 Sobic002G058200--Sobic002G100700 Sobic004G304200--Sobic003G216000 Sobic004G304200--Sobic005G137400 Sobic004G304200--Sobic004G169700 Sobic004G304200--Sobic002G098200 Sobic004G246200 Sobic004G246200 Sobic004G304200--Sobic004G246200 Sobic003G366400 Sobic003G366400 Sobic004G304200--Sobic003G366400 Sobic005G151700 Sobic005G151700 Sobic004G304200--Sobic005G151700 Sobic004G260000 Sobic004G260000 Sobic004G304200--Sobic004G260000 Sobic004G074500 Sobic004G074500 Sobic004G304200--Sobic004G074500 Sobic003G216000--Sobic005G151700 Sobic003G216000--Sobic004G304200 Sobic003G216000--Sobic003G251301 Sobic003G216000--Sobic010G170550 Sobic001G483500 Sobic001G483500 Sobic003G216000--Sobic001G483500 Sobic004G006966 Sobic004G006966 Sobic003G216000--Sobic004G006966 Sobic005G137400--Sobic004G304200 Sobic005G137400--Sobic003G216000 Sobic005G215300 Sobic005G215300 Sobic005G137400--Sobic005G215300 Sobic005G137400--Sobic002G098200 Sobic005G137400--Sobic004G169700 Sobic001G101400 Sobic001G101400 Sobic005G137400--Sobic001G101400 Sobic005G137400--Sobic002G011600 Sobic002G013400 Sobic002G013400 Sobic005G137400--Sobic002G013400 Sobic005G137400--Sobic005G151700 Sobic007G198500 Sobic007G198500 Sobic005G043600--Sobic007G198500 Sobic005G043600--Sobic002G058200 Sobic005G043900 Sobic005G043900 Sobic005G043600--Sobic005G043900 Sobic005G043600--Sobic008G175032 Sobic005G043600--Sobic002G098200 Sobic008G048900 Sobic008G048900 Sobic005G043600--Sobic008G048900 Sobic003G203200 Sobic003G203200 Sobic005G043600--Sobic003G203200 Sobic001G359500 Sobic001G359500 Sobic005G043600--Sobic001G359500 Sobic001G247550 Sobic001G247550 Sobic005G043600--Sobic001G247550 Sobic009G012900--Sobic002G058200 Sobic009G029600 Sobic009G029600 Sobic009G012900--Sobic009G029600 Sobic009G012900--Sobic002G011600 Sobic009G012900--Sobic003G216000 Sobic006G030700 Sobic006G030700 Sobic009G012900--Sobic006G030700 Sobic009G012900--Sobic010G170550 Sobic002G215800 Sobic002G215800 Sobic009G012900--Sobic002G215800 Sobic001G351800 Sobic001G351800 Sobic009G012900--Sobic001G351800 Sobic009G012900--Sobic002G098200 Sobic007G187300 Sobic007G187300 Sobic002G100700--Sobic007G187300 Sobic002G100700--Sobic006G030700 Sobic006G100332 Sobic006G100332 Sobic002G100700--Sobic006G100332 Sobic009G226300 Sobic009G226300 Sobic002G100700--Sobic009G226300 Sobic001G249300 Sobic001G249300 Sobic002G100700--Sobic001G249300 Sobic005G018500 Sobic005G018500 Sobic002G100700--Sobic005G018500 Sobic002G100700--Sobic005G151700 Sobic009G054500 Sobic009G054500 Sobic002G100700--Sobic009G054500 Sobic002G100700--Sobic004G260000 Sobic003G401200 Sobic003G401200 Sobic004G169700--Sobic003G401200 Sobic004G169700--Sobic004G260000 Sobic007G219900 Sobic007G219900 Sobic004G169700--Sobic007G219900 Sobic004G169700--Sobic004G304200 Sobic004G169700--Sobic003G216000 Sobic006G140000 Sobic006G140000 Sobic004G169700--Sobic006G140000 Sobic004G169700--Sobic003G366400 Sobic004G169700--Sobic005G018500 Sobic004G169700--Sobic004G246200 Sobic002G011600--Sobic009G029600 Sobic001G280200 Sobic001G280200 Sobic002G011600--Sobic001G280200 Sobic002G011600--Sobic006G030700 Sobic002G011600--Sobic005G151700 Sobic002G011600--Sobic007G187300 Sobic002G011600--Sobic005G018500 Sobic002G011600--Sobic001G249300 Sobic009G211400 Sobic009G211400 Sobic002G011600--Sobic009G211400 Sobic010G098100 Sobic010G098100 Sobic002G011600--Sobic010G098100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.