Gene annotation
Transcriptome id Sobic.009G012900.1
Synonym Sb09g001290
Functional annotation leucine rich repeat protein, putative, expressed
UniProt B3VTC5 , C5YYI4
Pfam PF08263 PF00560
Panther DB PTHR27004 PTHR27004:SF36
NCBI CDD KOG0472; Leucine-rich repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G34930 : disease resistance family protein / LRR family protein
RAP-DB (Rice) LOC_Os01g41770.1 : leucine rich repeat protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G058200 SAM dependent carboxyl methyltransferase, putative, expressed -
2 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
3 Sobic.002G011600 NB-ARC domain containing protein, expressed -
4 Sobic.003G216000 pleiotropic drug resistance protein, putative, expressed -
5 Sobic.006G030700 receptor kinase, putative, expressed -
6 Sobic.010G170550 - -
7 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
8 Sobic.001G351800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@integral membrane protein, putative, expressed -
9 Sobic.002G098200 expressed protein -
10 Sobic.004G304000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
11 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
12 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
13 Sobic.005G151700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
14 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.002G100700 expressed protein -
17 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
18 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
19 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
20 Sobic.006G148500 OsWAK51 - OsWAK receptor-like protein kinase, expressed -


Gene co-expression network
sample Sobic009G012900 Sobic009G012900 Sobic002G058200 Sobic002G058200 Sobic009G012900--Sobic002G058200 Sobic009G029600 Sobic009G029600 Sobic009G012900--Sobic009G029600 Sobic002G011600 Sobic002G011600 Sobic009G012900--Sobic002G011600 Sobic003G216000 Sobic003G216000 Sobic009G012900--Sobic003G216000 Sobic006G030700 Sobic006G030700 Sobic009G012900--Sobic006G030700 Sobic010G170550 Sobic010G170550 Sobic009G012900--Sobic010G170550 Sobic002G215800 Sobic002G215800 Sobic009G012900--Sobic002G215800 Sobic001G351800 Sobic001G351800 Sobic009G012900--Sobic001G351800 Sobic002G098200 Sobic002G098200 Sobic009G012900--Sobic002G098200 Sobic003G251301 Sobic003G251301 Sobic002G058200--Sobic003G251301 Sobic002G058200--Sobic003G216000 Sobic002G058200--Sobic009G012900 Sobic005G043600 Sobic005G043600 Sobic002G058200--Sobic005G043600 Sobic002G058200--Sobic002G098200 Sobic008G175032 Sobic008G175032 Sobic002G058200--Sobic008G175032 Sobic002G058200--Sobic010G170550 Sobic002G058200--Sobic002G011600 Sobic002G100700 Sobic002G100700 Sobic002G058200--Sobic002G100700 Sobic004G255000 Sobic004G255000 Sobic009G029600--Sobic004G255000 Sobic001G280200 Sobic001G280200 Sobic009G029600--Sobic001G280200 Sobic003G219600 Sobic003G219600 Sobic009G029600--Sobic003G219600 Sobic001G249300 Sobic001G249300 Sobic009G029600--Sobic001G249300 Sobic009G211400 Sobic009G211400 Sobic009G029600--Sobic009G211400 Sobic009G029600--Sobic006G030700 Sobic009G054500 Sobic009G054500 Sobic009G029600--Sobic009G054500 Sobic009G029600--Sobic002G215800 Sobic009G226300 Sobic009G226300 Sobic009G029600--Sobic009G226300 Sobic002G011600--Sobic009G029600 Sobic002G011600--Sobic001G280200 Sobic002G011600--Sobic006G030700 Sobic005G151700 Sobic005G151700 Sobic002G011600--Sobic005G151700 Sobic007G187300 Sobic007G187300 Sobic002G011600--Sobic007G187300 Sobic005G018500 Sobic005G018500 Sobic002G011600--Sobic005G018500 Sobic002G011600--Sobic001G249300 Sobic002G011600--Sobic009G211400 Sobic010G098100 Sobic010G098100 Sobic002G011600--Sobic010G098100 Sobic003G216000--Sobic005G151700 Sobic004G304200 Sobic004G304200 Sobic003G216000--Sobic004G304200 Sobic003G216000--Sobic003G251301 Sobic003G216000--Sobic010G170550 Sobic001G483500 Sobic001G483500 Sobic003G216000--Sobic001G483500 Sobic004G006966 Sobic004G006966 Sobic003G216000--Sobic004G006966 Sobic006G030700--Sobic007G187300 Sobic006G030700--Sobic009G226300 Sobic006G030700--Sobic001G249300 Sobic001G150600 Sobic001G150600 Sobic006G030700--Sobic001G150600 Sobic006G030700--Sobic001G280200 Sobic006G030700--Sobic009G054500 Sobic006G100332 Sobic006G100332 Sobic006G030700--Sobic006G100332 Sobic006G030700--Sobic009G029600 Sobic003G087200 Sobic003G087200 Sobic006G030700--Sobic003G087200 Sobic003G269700 Sobic003G269700 Sobic010G170550--Sobic003G269700 Sobic010G170550--Sobic009G029600 Sobic010G170550--Sobic004G255000 Sobic010G170550--Sobic003G219600 Sobic010G170550--Sobic001G483500 Sobic010G170550--Sobic005G151700 Sobic010G170550--Sobic003G216000 Sobic006G100400 Sobic006G100400 Sobic010G170550--Sobic006G100400 Sobic001G251900 Sobic001G251900 Sobic010G170550--Sobic001G251900 Sobic002G215800--Sobic009G029600 Sobic002G215800--Sobic009G211400 Sobic002G215800--Sobic003G219600 Sobic002G215800--Sobic004G255000 Sobic002G215800--Sobic001G249300 Sobic002G215800--Sobic001G280200 Sobic003G138200 Sobic003G138200 Sobic002G215800--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic002G215800--Sobic004G260000 Sobic010G107000 Sobic010G107000 Sobic002G215800--Sobic010G107000 Sobic004G034600 Sobic004G034600 Sobic001G351800--Sobic004G034600 Sobic003G322700 Sobic003G322700 Sobic001G351800--Sobic003G322700 Sobic002G266000 Sobic002G266000 Sobic001G351800--Sobic002G266000 Sobic003G010600 Sobic003G010600 Sobic001G351800--Sobic003G010600 Sobic004G124200 Sobic004G124200 Sobic001G351800--Sobic004G124200 Sobic009G034700 Sobic009G034700 Sobic001G351800--Sobic009G034700 Sobic010G192800 Sobic010G192800 Sobic001G351800--Sobic010G192800 Sobic004G225200 Sobic004G225200 Sobic001G351800--Sobic004G225200 Sobic001G282600 Sobic001G282600 Sobic001G351800--Sobic001G282600 Sobic002G098200--Sobic002G058200 Sobic002G098200--Sobic004G304200 Sobic002G098200--Sobic003G216000 Sobic005G137400 Sobic005G137400 Sobic002G098200--Sobic005G137400 Sobic002G098200--Sobic005G043600 Sobic002G098200--Sobic009G012900 Sobic002G098200--Sobic002G100700 Sobic004G169700 Sobic004G169700 Sobic002G098200--Sobic004G169700 Sobic002G098200--Sobic002G011600
Octagon: transcription factors


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