Gene annotation
Transcriptome id Sobic.004G304000.1,Sobic.004G304000.3
Synonym Sb04g033710
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5XSQ2 , A0A1Z5RPZ5
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF376
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01800 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os02g42810.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032122
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G292100 auxin efflux carrier component, putative, expressed -
2 Sobic.006G030700 receptor kinase, putative, expressed -
3 Sobic.001G162700 "phosphatidylinositol phosphatase, up-regulated under severe drought stress"(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed K01106: inositol-1,4,5-trisphosphate 5-phosphatase
4 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
5 Sobic.002G011600 NB-ARC domain containing protein, expressed -
6 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
7 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
8 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
9 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
10 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
11 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
12 Sobic.002G352800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactose permease-related, putative, expressed -
13 Sobic.001G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSCP44 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
14 Sobic.003G265100 lipid phosphatase protein, putative, expressed -
15 Sobic.001G150650 - -
16 Sobic.009G012900 leucine rich repeat protein, putative, expressed -
17 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
18 Sobic.007G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
19 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G304000 Sobic004G304000 Sobic002G292100 Sobic002G292100 Sobic004G304000--Sobic002G292100 Sobic006G030700 Sobic006G030700 Sobic004G304000--Sobic006G030700 Sobic001G162700 Sobic001G162700 Sobic004G304000--Sobic001G162700 Sobic009G029600 Sobic009G029600 Sobic004G304000--Sobic009G029600 Sobic002G011600 Sobic002G011600 Sobic004G304000--Sobic002G011600 Sobic003G257100 Sobic003G257100 Sobic004G304000--Sobic003G257100 Sobic006G199000 Sobic006G199000 Sobic004G304000--Sobic006G199000 Sobic003G398100 Sobic003G398100 Sobic004G304000--Sobic003G398100 Sobic001G150600 Sobic001G150600 Sobic004G304000--Sobic001G150600 Sobic009G193700 Sobic009G193700 Sobic002G292100--Sobic009G193700 Sobic002G352800 Sobic002G352800 Sobic002G292100--Sobic002G352800 Sobic001G483500 Sobic001G483500 Sobic002G292100--Sobic001G483500 Sobic001G412700 Sobic001G412700 Sobic002G292100--Sobic001G412700 Sobic002G292100--Sobic009G029600 Sobic002G292100--Sobic004G304000 Sobic010G098100 Sobic010G098100 Sobic002G292100--Sobic010G098100 Sobic001G212000 Sobic001G212000 Sobic002G292100--Sobic001G212000 Sobic009G211400 Sobic009G211400 Sobic002G292100--Sobic009G211400 Sobic007G187300 Sobic007G187300 Sobic006G030700--Sobic007G187300 Sobic009G226300 Sobic009G226300 Sobic006G030700--Sobic009G226300 Sobic001G249300 Sobic001G249300 Sobic006G030700--Sobic001G249300 Sobic006G030700--Sobic001G150600 Sobic001G280200 Sobic001G280200 Sobic006G030700--Sobic001G280200 Sobic009G054500 Sobic009G054500 Sobic006G030700--Sobic009G054500 Sobic006G100332 Sobic006G100332 Sobic006G030700--Sobic006G100332 Sobic006G030700--Sobic009G029600 Sobic003G087200 Sobic003G087200 Sobic006G030700--Sobic003G087200 Sobic001G162700--Sobic001G280200 Sobic001G162700--Sobic001G249300 Sobic001G162700--Sobic010G098100 Sobic001G162700--Sobic009G029600 Sobic003G259200 Sobic003G259200 Sobic001G162700--Sobic003G259200 Sobic004G255000 Sobic004G255000 Sobic001G162700--Sobic004G255000 Sobic001G162700--Sobic001G483500 Sobic001G162700--Sobic006G030700 Sobic001G162700--Sobic001G412700 Sobic009G029600--Sobic004G255000 Sobic009G029600--Sobic001G280200 Sobic003G219600 Sobic003G219600 Sobic009G029600--Sobic003G219600 Sobic009G029600--Sobic001G249300 Sobic009G029600--Sobic009G211400 Sobic009G029600--Sobic006G030700 Sobic009G029600--Sobic009G054500 Sobic002G215800 Sobic002G215800 Sobic009G029600--Sobic002G215800 Sobic009G029600--Sobic009G226300 Sobic002G011600--Sobic009G029600 Sobic002G011600--Sobic001G280200 Sobic002G011600--Sobic006G030700 Sobic005G151700 Sobic005G151700 Sobic002G011600--Sobic005G151700 Sobic002G011600--Sobic007G187300 Sobic005G018500 Sobic005G018500 Sobic002G011600--Sobic005G018500 Sobic002G011600--Sobic001G249300 Sobic002G011600--Sobic009G211400 Sobic002G011600--Sobic010G098100 Sobic003G257100--Sobic009G029600 Sobic003G257100--Sobic006G199000 Sobic008G153400 Sobic008G153400 Sobic003G257100--Sobic008G153400 Sobic003G257100--Sobic003G398100 Sobic010G107000 Sobic010G107000 Sobic003G257100--Sobic010G107000 Sobic003G257100--Sobic002G352800 Sobic003G257100--Sobic009G211400 Sobic003G257100--Sobic006G030700 Sobic002G409500 Sobic002G409500 Sobic003G257100--Sobic002G409500 Sobic006G199000--Sobic008G153400 Sobic006G199000--Sobic003G398100 Sobic006G199000--Sobic003G257100 Sobic003G355600 Sobic003G355600 Sobic006G199000--Sobic003G355600 Sobic001G325200 Sobic001G325200 Sobic006G199000--Sobic001G325200 Sobic006G199000--Sobic001G150600 Sobic001G015500 Sobic001G015500 Sobic006G199000--Sobic001G015500 Sobic001G282600 Sobic001G282600 Sobic006G199000--Sobic001G282600 Sobic006G091700 Sobic006G091700 Sobic006G199000--Sobic006G091700 Sobic003G398100--Sobic006G199000 Sobic003G398100--Sobic008G153400 Sobic009G207600 Sobic009G207600 Sobic003G398100--Sobic009G207600 Sobic001G504900 Sobic001G504900 Sobic003G398100--Sobic001G504900 Sobic003G398100--Sobic003G257100 Sobic001G496100 Sobic001G496100 Sobic003G398100--Sobic001G496100 Sobic003G398100--Sobic003G355600 Sobic003G322700 Sobic003G322700 Sobic003G398100--Sobic003G322700 Sobic003G398100--Sobic001G150600 Sobic001G150600--Sobic003G087200 Sobic001G150600--Sobic006G100332 Sobic001G150600--Sobic008G153400 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G150600--Sobic003G148800 Sobic001G150600--Sobic001G325200 Sobic001G150600--Sobic009G054500 Sobic004G321800 Sobic004G321800 Sobic001G150600--Sobic004G321800
Octagon: transcription factors


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