Gene annotation
| Transcriptome id | Sobic.002G352800.3,Sobic.002G352800.2,Sobic.002G352800.1 |
|---|---|
| Synonym | Sb02g037470 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) lactose permease-related, putative, expressed |
| UniProt | A0A1B6QF55 |
| Pfam | PF13347 |
| Panther DB | PTHR11328 PTHR11328:SF34 |
| NCBI CDD | KOG4830; Predicted sugar transporter |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G44280 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g39010.1 : lactose permease-related, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048506 , Zm00025a014995 |
| Brachypodium | KQK15544 |
| Barley | HORVU2Hr1G036870.8 , HORVU2Hr1G036870.9 , HORVU2Hr1G036870.1 , HORVU2Hr1G036870.2 , HORVU2Hr1G036870.3 , HORVU2Hr1G036870.4 , HORVU2Hr1G036870.5 , HORVU2Hr1G036870.6 , HORVU2Hr1G036870.7 , HORVU2Hr1G036870.12 , HORVU2Hr1G036870.13 , HORVU2Hr1G036870.10 , HORVU2Hr1G036870.11 , HORVU2Hr1G036870.16 , HORVU2Hr1G036870.17 , HORVU2Hr1G036870.14 , HORVU2Hr1G036870.15 , HORVU2Hr1G036870.18 , HORVU2Hr1G036870.19 , HORVU2Hr1G036870.22 , HORVU2Hr1G036870.21 , HORVU2Hr1G036870.20 |
| Wheat | TraesCS2A02G187600 , TraesCS2A02G187600 , TraesCS2D02G200300 , TraesCS2B02G219700 , TraesCS2B02G219700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G257100 | YT521-B-like family domain containing protein, expressed | - |
| 2 | Sobic.006G204900 | protein kinase, putative, expressed | K18670: dual specificity protein kinase YAK1 |
| 3 | Sobic.003G320700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.009G193700 | transmembrane protein 56, putative, expressed | - |
| 5 | Sobic.009G211400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed | - |
| 6 | Sobic.009G029600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed | K01919: glutamate--cysteine ligase |
| 7 | Sobic.002G292100 | auxin efflux carrier component, putative, expressed | - |
| 8 | Sobic.010G107000 | phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed | K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase |
| 9 | Sobic.006G199000 | pathogenesis-related Bet v I family protein, putative, expressed | - |
| 10 | Sobic.003G317400 | Diacylglycerol kinase DGK (Os)(PubMedID : 27208977)@diacylglycerol kinase, putative, expressed | K04718: sphingosine kinase |
| 11 | Sobic.002G215800 | ctr copper transporter family protein, putative, expressed | K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1 |
| 12 | Sobic.003G322700 | expressed protein | - |
| 13 | Sobic.009G133500 | expressed protein | - |
| 14 | Sobic.006G087700 | T-complex protein 11, putative, expressed | - |
| 15 | Sobic.003G355600 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 16 | Sobic.003G398100 | antigen peptide transporter-like 1, chloroplast precursor, putative, expressed | - |
| 17 | Sobic.003G219600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed | K08337: ubiquitin-like modifier-activating enzyme ATG7 |
| 18 | Sobic.006G030700 | receptor kinase, putative, expressed | - |
| 19 | Sobic.008G153400 | peptidase, putative, expressed | K18151: ureidoglycolate amidohydrolase |
| 20 | Sobic.001G496100 | - | - |
Gene co-expression network
Octagon: transcription factors
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