Gene annotation
Transcriptome id Sobic.001G351800.1
Synonym Sb01g033660
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
integral membrane protein, putative, expressed
UniProt C5WXQ9
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF55
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G45370 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os06g49500.2 : integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a052093 , Zm00025a002711
Brachypodium -
Barley HORVU7Hr1G095750.3 , HORVU7Hr1G095750.2 , HORVU7Hr1G095750.1 , HORVU7Hr1G095750.7 , HORVU7Hr1G095750.6 , HORVU7Hr1G095750.5 , HORVU7Hr1G095750.4 , HORVU7Hr1G095750.9 , HORVU7Hr1G095750.8 , HORVU7Hr1G095750.11 , HORVU7Hr1G095750.10 , HORVU6Hr1G050960.2 , HORVU6Hr1G050960.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.003G322700 expressed protein -
3 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
4 Sobic.003G010600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
5 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
6 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
7 Sobic.010G192800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
9 Sobic.001G282600 transporter family protein, putative, expressed -
10 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
12 Sobic.001G496100 - -
13 Sobic.002G249200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin efflux carrier component, putative, expressed -
14 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
15 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
16 Sobic.004G265800 uridine kinase, putative, expressed -
17 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
18 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
19 Sobic.003G039700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
20 Sobic.002G249300 auxin efflux carrier component, putative, expressed -


Gene co-expression network
sample Sobic001G351800 Sobic001G351800 Sobic004G034600 Sobic004G034600 Sobic001G351800--Sobic004G034600 Sobic003G322700 Sobic003G322700 Sobic001G351800--Sobic003G322700 Sobic002G266000 Sobic002G266000 Sobic001G351800--Sobic002G266000 Sobic003G010600 Sobic003G010600 Sobic001G351800--Sobic003G010600 Sobic004G124200 Sobic004G124200 Sobic001G351800--Sobic004G124200 Sobic009G034700 Sobic009G034700 Sobic001G351800--Sobic009G034700 Sobic010G192800 Sobic010G192800 Sobic001G351800--Sobic010G192800 Sobic004G225200 Sobic004G225200 Sobic001G351800--Sobic004G225200 Sobic001G282600 Sobic001G282600 Sobic001G351800--Sobic001G282600 Sobic005G149700 Sobic005G149700 Sobic004G034600--Sobic005G149700 Sobic002G249300 Sobic002G249300 Sobic004G034600--Sobic002G249300 Sobic001G517800 Sobic001G517800 Sobic004G034600--Sobic001G517800 Sobic009G011600 Sobic009G011600 Sobic004G034600--Sobic009G011600 Sobic004G034600--Sobic002G266000 Sobic001G459600 Sobic001G459600 Sobic004G034600--Sobic001G459600 Sobic004G034600--Sobic003G322700 Sobic001G223550 Sobic001G223550 Sobic004G034600--Sobic001G223550 Sobic004G261900 Sobic004G261900 Sobic004G034600--Sobic004G261900 Sobic003G322700--Sobic002G266000 Sobic006G204900 Sobic006G204900 Sobic003G322700--Sobic006G204900 Sobic010G001500 Sobic010G001500 Sobic003G322700--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic003G322700--Sobic004G355000 Sobic001G207400 Sobic001G207400 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic006G087700 Sobic006G087700 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic003G322700--Sobic004G034600 Sobic002G266000--Sobic003G322700 Sobic002G266000--Sobic001G282600 Sobic006G104600 Sobic006G104600 Sobic002G266000--Sobic006G104600 Sobic002G249200 Sobic002G249200 Sobic002G266000--Sobic002G249200 Sobic002G266000--Sobic004G261900 Sobic007G004500 Sobic007G004500 Sobic002G266000--Sobic007G004500 Sobic002G266000--Sobic004G034600 Sobic002G266000--Sobic005G149700 Sobic002G266000--Sobic004G225200 Sobic001G325200 Sobic001G325200 Sobic003G010600--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic003G010600--Sobic009G226300 Sobic004G260000 Sobic004G260000 Sobic003G010600--Sobic004G260000 Sobic009G054500 Sobic009G054500 Sobic003G010600--Sobic009G054500 Sobic009G211400 Sobic009G211400 Sobic003G010600--Sobic009G211400 Sobic008G062200 Sobic008G062200 Sobic003G010600--Sobic008G062200 Sobic006G100332 Sobic006G100332 Sobic003G010600--Sobic006G100332 Sobic005G018500 Sobic005G018500 Sobic003G010600--Sobic005G018500 Sobic003G219600 Sobic003G219600 Sobic003G010600--Sobic003G219600 Sobic003G388251 Sobic003G388251 Sobic004G124200--Sobic003G388251 Sobic004G101900 Sobic004G101900 Sobic004G124200--Sobic004G101900 Sobic004G124200--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic004G124200--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic004G124200--Sobic009G161000 Sobic010G043400 Sobic010G043400 Sobic004G124200--Sobic010G043400 Sobic004G124200--Sobic006G199000 Sobic007G068100 Sobic007G068100 Sobic004G124200--Sobic007G068100 Sobic005G178100 Sobic005G178100 Sobic004G124200--Sobic005G178100 Sobic009G034700--Sobic005G178100 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic009G034700--Sobic001G474500 Sobic001G069900 Sobic001G069900 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic008G079300 Sobic008G079300 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500 Sobic009G016600 Sobic009G016600 Sobic010G192800--Sobic009G016600 Sobic010G192800--Sobic001G351800 Sobic003G404200 Sobic003G404200 Sobic010G192800--Sobic003G404200 Sobic007G063300 Sobic007G063300 Sobic010G192800--Sobic007G063300 Sobic002G338100 Sobic002G338100 Sobic010G192800--Sobic002G338100 Sobic010G192800--Sobic009G034700 Sobic001G469500 Sobic001G469500 Sobic010G192800--Sobic001G469500 Sobic003G365000 Sobic003G365000 Sobic010G192800--Sobic003G365000 Sobic010G192800--Sobic003G388251 Sobic004G225100 Sobic004G225100 Sobic004G225200--Sobic004G225100 Sobic004G225200--Sobic001G282600 Sobic004G225200--Sobic002G266000 Sobic004G225200--Sobic006G199000 Sobic003G398100 Sobic003G398100 Sobic004G225200--Sobic003G398100 Sobic004G225200--Sobic006G104600 Sobic004G071200 Sobic004G071200 Sobic004G225200--Sobic004G071200 Sobic004G225200--Sobic003G322700 Sobic004G225200--Sobic005G178100 Sobic001G282600--Sobic002G266000 Sobic001G282600--Sobic006G104600 Sobic001G282600--Sobic006G199000 Sobic001G282600--Sobic004G225200 Sobic007G210500 Sobic007G210500 Sobic001G282600--Sobic007G210500 Sobic004G329300 Sobic004G329300 Sobic001G282600--Sobic004G329300 Sobic008G153400 Sobic008G153400 Sobic001G282600--Sobic008G153400 Sobic001G282600--Sobic003G355600 Sobic001G282600--Sobic003G322700
Octagon: transcription factors


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