Gene annotation
Transcriptome id Sobic.003G039700.1
Synonym Sb03g003550
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed
UniProt C5XMM0
Pfam PF03171
Panther DB PTHR10209 PTHR10209:SF148
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G59530 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os06g14400.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed
MaizeGDB (Corn) Zm00025a023145
Brachypodium KQK18706 , KQK18695
Barley HORVU7Hr1G041460.1
Wheat TraesCS7A02G203200 , TraesCS7B02G110400 , TraesCS6D02G259100 , TraesCS6D02G259100 , TraesCS6A02G278500 , TraesCS7D02G206500
Populus -


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cDNA sequences
Sobic.003G039700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G135000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
2 Sobic.001G351800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@integral membrane protein, putative, expressed -
3 Sobic.007G084300 kelch repeat protein, putative, expressed -
4 Sobic.001G469500 transporter family protein, putative, expressed -
5 Sobic.004G063400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDU1, putative, expressed -
6 Sobic.010G039401 - -
7 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.003G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
9 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
10 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.010G044700 leucine zipper protein-like, putative, expressed -
12 Sobic.002G249200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin efflux carrier component, putative, expressed -
13 Sobic.002G130000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
14 Sobic.009G241300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
16 Sobic.002G373100 strictosidine synthase, putative, expressed -
17 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
18 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
19 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
20 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -


Gene co-expression network
sample Sobic003G039700 Sobic003G039700 Sobic007G135000 Sobic007G135000 Sobic003G039700--Sobic007G135000 Sobic001G351800 Sobic001G351800 Sobic003G039700--Sobic001G351800 Sobic007G084300 Sobic007G084300 Sobic003G039700--Sobic007G084300 Sobic001G469500 Sobic001G469500 Sobic003G039700--Sobic001G469500 Sobic004G063400 Sobic004G063400 Sobic003G039700--Sobic004G063400 Sobic010G039401 Sobic010G039401 Sobic003G039700--Sobic010G039401 Sobic008G079300 Sobic008G079300 Sobic003G039700--Sobic008G079300 Sobic003G022600 Sobic003G022600 Sobic003G039700--Sobic003G022600 Sobic009G034700 Sobic009G034700 Sobic003G039700--Sobic009G034700 Sobic003G097100 Sobic003G097100 Sobic007G135000--Sobic003G097100 Sobic009G241300 Sobic009G241300 Sobic007G135000--Sobic009G241300 Sobic007G135000--Sobic001G469500 Sobic007G135000--Sobic003G022600 Sobic007G135000--Sobic003G039700 Sobic009G241400 Sobic009G241400 Sobic007G135000--Sobic009G241400 Sobic003G363100 Sobic003G363100 Sobic007G135000--Sobic003G363100 Sobic006G242000 Sobic006G242000 Sobic007G135000--Sobic006G242000 Sobic010G192800 Sobic010G192800 Sobic007G135000--Sobic010G192800 Sobic004G034600 Sobic004G034600 Sobic001G351800--Sobic004G034600 Sobic003G322700 Sobic003G322700 Sobic001G351800--Sobic003G322700 Sobic002G266000 Sobic002G266000 Sobic001G351800--Sobic002G266000 Sobic003G010600 Sobic003G010600 Sobic001G351800--Sobic003G010600 Sobic004G124200 Sobic004G124200 Sobic001G351800--Sobic004G124200 Sobic001G351800--Sobic009G034700 Sobic001G351800--Sobic010G192800 Sobic004G225200 Sobic004G225200 Sobic001G351800--Sobic004G225200 Sobic001G282600 Sobic001G282600 Sobic001G351800--Sobic001G282600 Sobic006G030600 Sobic006G030600 Sobic007G084300--Sobic006G030600 Sobic006G143000 Sobic006G143000 Sobic007G084300--Sobic006G143000 Sobic010G196500 Sobic010G196500 Sobic007G084300--Sobic010G196500 Sobic007G084300--Sobic004G034600 Sobic002G373100 Sobic002G373100 Sobic007G084300--Sobic002G373100 Sobic003G086900 Sobic003G086900 Sobic007G084300--Sobic003G086900 Sobic009G016600 Sobic009G016600 Sobic007G084300--Sobic009G016600 Sobic002G249300 Sobic002G249300 Sobic007G084300--Sobic002G249300 Sobic002G193100 Sobic002G193100 Sobic007G084300--Sobic002G193100 Sobic001G469500--Sobic007G135000 Sobic010G044700 Sobic010G044700 Sobic001G469500--Sobic010G044700 Sobic001G469500--Sobic003G363100 Sobic001G469500--Sobic010G192800 Sobic001G469500--Sobic003G022600 Sobic001G469500--Sobic003G039700 Sobic001G469500--Sobic003G097100 Sobic002G130000 Sobic002G130000 Sobic001G469500--Sobic002G130000 Sobic008G009200 Sobic008G009200 Sobic001G469500--Sobic008G009200 Sobic001G504900 Sobic001G504900 Sobic004G063400--Sobic001G504900 Sobic004G063400--Sobic002G130000 Sobic004G063400--Sobic009G034700 Sobic004G063400--Sobic008G079300 Sobic009G207600 Sobic009G207600 Sobic004G063400--Sobic009G207600 Sobic005G178100 Sobic005G178100 Sobic004G063400--Sobic005G178100 Sobic001G069900 Sobic001G069900 Sobic004G063400--Sobic001G069900 Sobic001G015500 Sobic001G015500 Sobic004G063400--Sobic001G015500 Sobic006G181300 Sobic006G181300 Sobic004G063400--Sobic006G181300 Sobic010G039401--Sobic003G039700 Sobic002G177300 Sobic002G177300 Sobic010G039401--Sobic002G177300 Sobic010G039401--Sobic001G469500 Sobic010G039401--Sobic007G135000 Sobic008G027200 Sobic008G027200 Sobic010G039401--Sobic008G027200 Sobic010G039401--Sobic003G022600 Sobic010G039401--Sobic009G241300 Sobic007G157100 Sobic007G157100 Sobic010G039401--Sobic007G157100 Sobic010G039401--Sobic010G044700 Sobic003G184900 Sobic003G184900 Sobic008G079300--Sobic003G184900 Sobic003G105800 Sobic003G105800 Sobic008G079300--Sobic003G105800 Sobic007G225900 Sobic007G225900 Sobic008G079300--Sobic007G225900 Sobic004G321800 Sobic004G321800 Sobic008G079300--Sobic004G321800 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic008G079300--Sobic009G034700 Sobic001G474500 Sobic001G474500 Sobic008G079300--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic008G079300--Sobic001G325200 Sobic003G022600--Sobic007G135000 Sobic003G010300 Sobic003G010300 Sobic003G022600--Sobic003G010300 Sobic003G022600--Sobic003G097100 Sobic003G022600--Sobic001G469500 Sobic003G022600--Sobic006G242000 Sobic003G022600--Sobic003G039700 Sobic003G022600--Sobic007G157100 Sobic003G022600--Sobic009G016600 Sobic010G137300 Sobic010G137300 Sobic003G022600--Sobic010G137300 Sobic009G034700--Sobic005G178100 Sobic003G388251 Sobic003G388251 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic009G034700--Sobic001G474500 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500
Octagon: transcription factors


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