Gene annotation
Transcriptome id Sobic.002G130000.2
Synonym Sb02g011210
Functional annotation dehydrodolichyl diphosphate synthase, putative, expressed
UniProt A0A1W0W3N2
Pfam PF01255
Panther DB PTHR10291 PTHR10291:SF6
NCBI CDD KOG1602; Cis-prenyltransferase
KEGG Orthology K11778; DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
Gene Ontology GO:0016765; transferase activity, transferring alkyl or aryl (other than methyl) groups


Orthologs (automatic annotation)
TAIR AT5G58770 : Undecaprenyl pyrophosphate synthetase family protein
RAP-DB (Rice) LOC_Os01g63830.1 : dehydrodolichyl diphosphate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a039598 , Zm00025a045903
Brachypodium -
Barley HORVU4Hr1G090410.4 , HORVU4Hr1G090410.1 , HORVU4Hr1G090410.3
Wheat TraesCSU02G182000 , TraesCS5A02G547000 , TraesCS4B02G379000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G063400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDU1, putative, expressed -
2 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
3 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
4 Sobic.010G192800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
6 Sobic.004G193000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
7 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
8 Sobic.001G469500 transporter family protein, putative, expressed -
9 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
10 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
11 Sobic.003G039700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
12 Sobic.001G316400 heavy metal-associated domain containing protein, expressed -
13 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.003G365000 cytochrome P450, putative, expressed -
15 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
16 Sobic.007G035000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
17 Sobic.007G034000 expressed protein -
18 Sobic.009G016600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -
20 Sobic.003G087200 nuclease PA3, putative, expressed -


Gene co-expression network
sample Sobic002G130000 Sobic002G130000 Sobic004G063400 Sobic004G063400 Sobic002G130000--Sobic004G063400 Sobic001G504900 Sobic001G504900 Sobic002G130000--Sobic001G504900 Sobic009G034700 Sobic009G034700 Sobic002G130000--Sobic009G034700 Sobic010G192800 Sobic010G192800 Sobic002G130000--Sobic010G192800 Sobic009G207600 Sobic009G207600 Sobic002G130000--Sobic009G207600 Sobic004G193000 Sobic004G193000 Sobic002G130000--Sobic004G193000 Sobic005G178100 Sobic005G178100 Sobic002G130000--Sobic005G178100 Sobic001G469500 Sobic001G469500 Sobic002G130000--Sobic001G469500 Sobic006G181300 Sobic006G181300 Sobic002G130000--Sobic006G181300 Sobic004G063400--Sobic001G504900 Sobic004G063400--Sobic002G130000 Sobic004G063400--Sobic009G034700 Sobic008G079300 Sobic008G079300 Sobic004G063400--Sobic008G079300 Sobic004G063400--Sobic009G207600 Sobic004G063400--Sobic005G178100 Sobic001G069900 Sobic001G069900 Sobic004G063400--Sobic001G069900 Sobic001G015500 Sobic001G015500 Sobic004G063400--Sobic001G015500 Sobic004G063400--Sobic006G181300 Sobic001G504900--Sobic009G207600 Sobic003G398100 Sobic003G398100 Sobic001G504900--Sobic003G398100 Sobic004G261900 Sobic004G261900 Sobic001G504900--Sobic004G261900 Sobic005G149700 Sobic005G149700 Sobic001G504900--Sobic005G149700 Sobic002G266000 Sobic002G266000 Sobic001G504900--Sobic002G266000 Sobic002G338100 Sobic002G338100 Sobic001G504900--Sobic002G338100 Sobic001G504900--Sobic001G069900 Sobic001G504900--Sobic006G181300 Sobic001G504900--Sobic001G015500 Sobic009G034700--Sobic005G178100 Sobic003G388251 Sobic003G388251 Sobic009G034700--Sobic003G388251 Sobic004G124200 Sobic004G124200 Sobic009G034700--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic009G034700--Sobic001G474500 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic001G325200 Sobic001G325200 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500 Sobic009G016600 Sobic009G016600 Sobic010G192800--Sobic009G016600 Sobic001G351800 Sobic001G351800 Sobic010G192800--Sobic001G351800 Sobic003G404200 Sobic003G404200 Sobic010G192800--Sobic003G404200 Sobic007G063300 Sobic007G063300 Sobic010G192800--Sobic007G063300 Sobic010G192800--Sobic002G338100 Sobic010G192800--Sobic009G034700 Sobic010G192800--Sobic001G469500 Sobic003G365000 Sobic003G365000 Sobic010G192800--Sobic003G365000 Sobic010G192800--Sobic003G388251 Sobic009G207600--Sobic001G504900 Sobic009G207600--Sobic003G398100 Sobic009G207600--Sobic002G338100 Sobic009G207600--Sobic008G079300 Sobic009G207600--Sobic001G474500 Sobic008G153400 Sobic008G153400 Sobic009G207600--Sobic008G153400 Sobic001G496100 Sobic001G496100 Sobic009G207600--Sobic001G496100 Sobic006G091700 Sobic006G091700 Sobic009G207600--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic009G207600--Sobic003G087200 Sobic004G193000--Sobic002G130000 Sobic001G488700 Sobic001G488700 Sobic004G193000--Sobic001G488700 Sobic004G071200 Sobic004G071200 Sobic004G193000--Sobic004G071200 Sobic003G363100 Sobic003G363100 Sobic004G193000--Sobic003G363100 Sobic005G024200 Sobic005G024200 Sobic004G193000--Sobic005G024200 Sobic001G298700 Sobic001G298700 Sobic004G193000--Sobic001G298700 Sobic002G311200 Sobic002G311200 Sobic004G193000--Sobic002G311200 Sobic004G193000--Sobic001G469500 Sobic006G175800 Sobic006G175800 Sobic004G193000--Sobic006G175800 Sobic009G161000 Sobic009G161000 Sobic005G178100--Sobic009G161000 Sobic001G305800 Sobic001G305800 Sobic005G178100--Sobic001G305800 Sobic005G178100--Sobic003G087200 Sobic002G420700 Sobic002G420700 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic003G105800 Sobic003G105800 Sobic005G178100--Sobic003G105800 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic005G178100--Sobic001G150600 Sobic007G135000 Sobic007G135000 Sobic001G469500--Sobic007G135000 Sobic010G044700 Sobic010G044700 Sobic001G469500--Sobic010G044700 Sobic001G469500--Sobic003G363100 Sobic001G469500--Sobic010G192800 Sobic003G022600 Sobic003G022600 Sobic001G469500--Sobic003G022600 Sobic003G039700 Sobic003G039700 Sobic001G469500--Sobic003G039700 Sobic003G097100 Sobic003G097100 Sobic001G469500--Sobic003G097100 Sobic001G469500--Sobic002G130000 Sobic008G009200 Sobic008G009200 Sobic001G469500--Sobic008G009200 Sobic006G181300--Sobic001G069900 Sobic006G181300--Sobic003G087200 Sobic009G114000 Sobic009G114000 Sobic006G181300--Sobic009G114000 Sobic006G181300--Sobic006G091700 Sobic004G321800 Sobic004G321800 Sobic006G181300--Sobic004G321800 Sobic006G181300--Sobic009G207600 Sobic006G181300--Sobic001G015500 Sobic006G181300--Sobic008G079300 Sobic006G181300--Sobic001G150600
Octagon: transcription factors


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