Gene annotation
Transcriptome id Sobic.004G193000.1
Synonym Sb04g024090
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptide transporter PTR2, putative, expressed
UniProt C5XVS5
Pfam PF00854
Panther DB PTHR11654 PTHR11654:SF154
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT3G21670 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os04g39030.1 : peptide transporter PTR2, putative, expressed
MaizeGDB (Corn) Zm00025a055174 , Zm00025a003351 , Zm00025a011277 , Zm00025a020837
Brachypodium KQJ99998 , KQK00053 , KQJ83012
Barley HORVU2Hr1G076880.24 , HORVU2Hr1G076880.25 , HORVU2Hr1G076880.20 , HORVU2Hr1G076880.21 , HORVU2Hr1G076880.22 , HORVU2Hr1G076880.23 , HORVU2Hr1G076880.9 , HORVU2Hr1G076880.8 , HORVU2Hr1G076880.4 , HORVU2Hr1G076880.6 , HORVU2Hr1G076880.3 , HORVU5Hr1G099170.1 , HORVU5Hr1G099170.3 , HORVU5Hr1G099170.2 , HORVU5Hr1G099170.5 , HORVU5Hr1G099170.4 , HORVU5Hr1G099170.7 , HORVU5Hr1G099170.6 , HORVU7Hr1G071600.9 , HORVU7Hr1G071600.2 , HORVU7Hr1G071600.6 , HORVU7Hr1G071600.5 , HORVU2Hr1G076880.19 , HORVU2Hr1G076880.18 , HORVU2Hr1G076880.11 , HORVU2Hr1G076880.10 , HORVU2Hr1G076880.13 , HORVU2Hr1G076880.12 , HORVU2Hr1G076880.15 , HORVU2Hr1G076880.14 , HORVU2Hr1G076880.17 , HORVU2Hr1G076880.16 , HORVU7Hr1G068560.13 , HORVU4Hr1G088020.4 , HORVU4Hr1G088020.5 , HORVU4Hr1G088020.6 , HORVU4Hr1G088020.7 , HORVU4Hr1G088020.1 , HORVU4Hr1G088020.2 , HORVU4Hr1G088020.3 , HORVU4Hr1G088020.8 , HORVU4Hr1G088020.9 , HORVU4Hr1G088020.10 , HORVU4Hr1G088020.11 , HORVU2Hr1G081030.1 , HORVU1Hr1G053990.10 , HORVU2Hr1G081040.2 , HORVU2Hr1G081040.4 , HORVU7Hr1G071600.12 , HORVU7Hr1G071600.11 , HORVU7Hr1G071600.10 , HORVU1Hr1G054020.4 , HORVU1Hr1G054020.5 , HORVU1Hr1G054020.2 , HORVU1Hr1G054020.3 , HORVU7Hr1G071600.8 , HORVU7Hr1G068560.12 , HORVU7Hr1G071600.7 , HORVU2Hr1G076880.5 , HORVU2Hr1G076880.7 , HORVU2Hr1G076880.1 , HORVU2Hr1G076880.2 , HORVU1Hr1G053990.3 , HORVU1Hr1G053990.2 , HORVU1Hr1G053990.5 , HORVU1Hr1G053990.4 , HORVU1Hr1G053990.7 , HORVU1Hr1G053990.6 , HORVU1Hr1G053990.9 , HORVU1Hr1G053990.8 , HORVU2Hr1G065480.1 , HORVU1Hr1G004720.4 , HORVU1Hr1G004720.5 , HORVU1Hr1G004720.2 , HORVU1Hr1G004720.3 , HORVU1Hr1G004720.1
Wheat TraesCS4B02G371000 , TraesCS1A02G031300 , TraesCS1B02G038700 , TraesCS5A02G409600 , TraesCS2A02G335800 , TraesCS2A02G335800 , TraesCS5D02G419200 , TraesCS5D02G419200 , TraesCS7D02G297000 , TraesCS1B02G224900 , TraesCS7B02G201900 , TraesCS1A02G211000 , TraesCS5A02G537100 , TraesCS1A02G210900 , TraesCS7A02G301700 , TraesCS4B02G375800 , TraesCS1D02G214300 , TraesCS2B02G346100 , TraesCS2D02G327000 , TraesCS5B02G414000 , TraesCS5B02G414000 , TraesCS5B02G414000 , TraesCS1B02G225000 , TraesCS4D02G361500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G130000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
2 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
3 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -
4 Sobic.003G363100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialyltransferase family domain containing protein, expressed -
5 Sobic.005G024200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.001G298700 - -
7 Sobic.002G311200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.001G469500 transporter family protein, putative, expressed -
9 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
10 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.003G365000 cytochrome P450, putative, expressed -
12 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
13 Sobic.002G386100 expressed protein -
14 Sobic.010G192800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.007G185200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CorA-like magnesium transporter protein, putative, expressed -
16 Sobic.002G373100 strictosidine synthase, putative, expressed -
17 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
18 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
19 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
20 Sobic.002G187700 expressed protein -


Gene co-expression network
sample Sobic004G193000 Sobic004G193000 Sobic002G130000 Sobic002G130000 Sobic004G193000--Sobic002G130000 Sobic001G488700 Sobic001G488700 Sobic004G193000--Sobic001G488700 Sobic004G071200 Sobic004G071200 Sobic004G193000--Sobic004G071200 Sobic003G363100 Sobic003G363100 Sobic004G193000--Sobic003G363100 Sobic005G024200 Sobic005G024200 Sobic004G193000--Sobic005G024200 Sobic001G298700 Sobic001G298700 Sobic004G193000--Sobic001G298700 Sobic002G311200 Sobic002G311200 Sobic004G193000--Sobic002G311200 Sobic001G469500 Sobic001G469500 Sobic004G193000--Sobic001G469500 Sobic006G175800 Sobic006G175800 Sobic004G193000--Sobic006G175800 Sobic004G063400 Sobic004G063400 Sobic002G130000--Sobic004G063400 Sobic001G504900 Sobic001G504900 Sobic002G130000--Sobic001G504900 Sobic009G034700 Sobic009G034700 Sobic002G130000--Sobic009G034700 Sobic010G192800 Sobic010G192800 Sobic002G130000--Sobic010G192800 Sobic009G207600 Sobic009G207600 Sobic002G130000--Sobic009G207600 Sobic002G130000--Sobic004G193000 Sobic005G178100 Sobic005G178100 Sobic002G130000--Sobic005G178100 Sobic002G130000--Sobic001G469500 Sobic006G181300 Sobic006G181300 Sobic002G130000--Sobic006G181300 Sobic008G059100 Sobic008G059100 Sobic001G488700--Sobic008G059100 Sobic001G500800 Sobic001G500800 Sobic001G488700--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic001G488700--Sobic010G196500 Sobic002G187700 Sobic002G187700 Sobic001G488700--Sobic002G187700 Sobic004G233200 Sobic004G233200 Sobic001G488700--Sobic004G233200 Sobic001G488700--Sobic006G175800 Sobic003G302800 Sobic003G302800 Sobic001G488700--Sobic003G302800 Sobic001G481900 Sobic001G481900 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic004G225200 Sobic004G225200 Sobic004G071200--Sobic004G225200 Sobic006G091700 Sobic006G091700 Sobic004G071200--Sobic006G091700 Sobic003G398100 Sobic003G398100 Sobic004G071200--Sobic003G398100 Sobic002G420700 Sobic002G420700 Sobic004G071200--Sobic002G420700 Sobic004G071200--Sobic005G178100 Sobic004G071200--Sobic002G266000 Sobic007G035000 Sobic007G035000 Sobic004G071200--Sobic007G035000 Sobic008G153400 Sobic008G153400 Sobic004G071200--Sobic008G153400 Sobic002G085300 Sobic002G085300 Sobic004G071200--Sobic002G085300 Sobic003G363100--Sobic001G469500 Sobic005G217200 Sobic005G217200 Sobic003G363100--Sobic005G217200 Sobic010G018100 Sobic010G018100 Sobic003G363100--Sobic010G018100 Sobic009G000200 Sobic009G000200 Sobic003G363100--Sobic009G000200 Sobic008G189200 Sobic008G189200 Sobic003G363100--Sobic008G189200 Sobic007G135000 Sobic007G135000 Sobic003G363100--Sobic007G135000 Sobic004G028600 Sobic004G028600 Sobic003G363100--Sobic004G028600 Sobic002G274800 Sobic002G274800 Sobic003G363100--Sobic002G274800 Sobic003G276000 Sobic003G276000 Sobic003G363100--Sobic003G276000 Sobic001G159600 Sobic001G159600 Sobic005G024200--Sobic001G159600 Sobic005G024200--Sobic003G302800 Sobic004G266400 Sobic004G266400 Sobic005G024200--Sobic004G266400 Sobic006G135600 Sobic006G135600 Sobic005G024200--Sobic006G135600 Sobic005G024200--Sobic004G071200 Sobic003G365000 Sobic003G365000 Sobic005G024200--Sobic003G365000 Sobic003G109100 Sobic003G109100 Sobic005G024200--Sobic003G109100 Sobic005G024200--Sobic009G034700 Sobic001G382000 Sobic001G382000 Sobic005G024200--Sobic001G382000 Sobic010G262500 Sobic010G262500 Sobic001G298700--Sobic010G262500 Sobic005G221250 Sobic005G221250 Sobic001G298700--Sobic005G221250 Sobic001G298700--Sobic004G233200 Sobic003G086900 Sobic003G086900 Sobic001G298700--Sobic003G086900 Sobic001G298700--Sobic001G488700 Sobic004G131900 Sobic004G131900 Sobic001G298700--Sobic004G131900 Sobic001G298700--Sobic006G175800 Sobic001G298700--Sobic002G187700 Sobic001G298700--Sobic010G196500 Sobic001G531500 Sobic001G531500 Sobic002G311200--Sobic001G531500 Sobic010G150800 Sobic010G150800 Sobic002G311200--Sobic010G150800 Sobic006G145901 Sobic006G145901 Sobic002G311200--Sobic006G145901 Sobic001G305600 Sobic001G305600 Sobic002G311200--Sobic001G305600 Sobic004G070500 Sobic004G070500 Sobic002G311200--Sobic004G070500 Sobic010G227800 Sobic010G227800 Sobic002G311200--Sobic010G227800 Sobic002G403600 Sobic002G403600 Sobic002G311200--Sobic002G403600 Sobic009G011600 Sobic009G011600 Sobic002G311200--Sobic009G011600 Sobic006G064100 Sobic006G064100 Sobic002G311200--Sobic006G064100 Sobic001G469500--Sobic007G135000 Sobic010G044700 Sobic010G044700 Sobic001G469500--Sobic010G044700 Sobic001G469500--Sobic003G363100 Sobic001G469500--Sobic010G192800 Sobic003G022600 Sobic003G022600 Sobic001G469500--Sobic003G022600 Sobic003G039700 Sobic003G039700 Sobic001G469500--Sobic003G039700 Sobic003G097100 Sobic003G097100 Sobic001G469500--Sobic003G097100 Sobic001G469500--Sobic002G130000 Sobic008G009200 Sobic008G009200 Sobic001G469500--Sobic008G009200 Sobic006G175800--Sobic010G262500 Sobic004G169000 Sobic004G169000 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic006G175800--Sobic002G187700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic003G043300 Sobic003G043300 Sobic006G175800--Sobic003G043300 Sobic006G175800--Sobic001G500800 Sobic006G175800--Sobic010G196500
Octagon: transcription factors


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