Gene annotation
Transcriptome id Sobic.002G311200.1
Synonym Sb02g034090, ALF5
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt C5X9B3
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF78
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G23560 : MATE efflux family protein
RAP-DB (Rice) LOC_Os07g31884.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048145
Brachypodium KQK16110 , KQK16109
Barley HORVU0Hr1G039670.5 , HORVU0Hr1G039670.4 , HORVU0Hr1G039670.7 , HORVU0Hr1G039670.6 , HORVU0Hr1G039670.1 , HORVU0Hr1G039670.9 , HORVU1Hr1G003490.3 , HORVU1Hr1G003490.2 , HORVU0Hr1G039670.11 , HORVU0Hr1G039670.10 , HORVU0Hr1G039670.12 , HORVU0Hr1G039670.14 , HORVU0Hr1G039670.17 , HORVU0Hr1G039670.19 , HORVU0Hr1G039670.18
Wheat TraesCS2A02G139200 , TraesCS6A02G350400 , TraesCS2A02G139300 , TraesCS1A02G032900 , TraesCS2D02G142100 , TraesCS6B02G383300 , TraesCS2B02G163300 , TraesCS2B02G163300 , TraesCS6D02G332800 , TraesCS6D02G332800 , TraesCS2B02G163300 , TraesCS1D02G034300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
2 Sobic.010G150800 expressed protein -
3 Sobic.006G145901 - K05350: beta-glucosidase
4 Sobic.001G305600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
5 Sobic.004G070500 expressed protein -
6 Sobic.010G227800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metal transporter Nramp6, putative, expressed -
7 Sobic.002G403600 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@rhythmically expressed gene 2 protein, putative, expressed -
8 Sobic.009G011600 expressed protein -
9 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
10 Sobic.006G135600 Up-regulated by silicon application under drought stress (PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
11 Sobic.004G325100 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
12 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G160200 multidrug resistance-associated protein, putative, expressed K05665: ATP-binding cassette, subfamily C (CFTR/MRP), member 1
14 Sobic.002G190300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
16 Sobic.001G159600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
17 Sobic.005G024200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
18 Sobic.002G338100 THYLAKOID FORMATION1, chloroplast precursor, putative, expressed -
19 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
20 Sobic.010G060300 leucoanthocyanidin dioxygenase, putative, expressed -


Gene co-expression network
sample Sobic002G311200 Sobic002G311200 Sobic001G531500 Sobic001G531500 Sobic002G311200--Sobic001G531500 Sobic010G150800 Sobic010G150800 Sobic002G311200--Sobic010G150800 Sobic006G145901 Sobic006G145901 Sobic002G311200--Sobic006G145901 Sobic001G305600 Sobic001G305600 Sobic002G311200--Sobic001G305600 Sobic004G070500 Sobic004G070500 Sobic002G311200--Sobic004G070500 Sobic010G227800 Sobic010G227800 Sobic002G311200--Sobic010G227800 Sobic002G403600 Sobic002G403600 Sobic002G311200--Sobic002G403600 Sobic009G011600 Sobic009G011600 Sobic002G311200--Sobic009G011600 Sobic006G064100 Sobic006G064100 Sobic002G311200--Sobic006G064100 Sobic002G118200 Sobic002G118200 Sobic001G531500--Sobic002G118200 Sobic001G531500--Sobic006G064100 Sobic001G531500--Sobic002G403600 Sobic001G073900 Sobic001G073900 Sobic001G531500--Sobic001G073900 Sobic010G205100 Sobic010G205100 Sobic001G531500--Sobic010G205100 Sobic009G123900 Sobic009G123900 Sobic001G531500--Sobic009G123900 Sobic005G001700 Sobic005G001700 Sobic001G531500--Sobic005G001700 Sobic008G001900 Sobic008G001900 Sobic001G531500--Sobic008G001900 Sobic003G332700 Sobic003G332700 Sobic001G531500--Sobic003G332700 Sobic010G181100 Sobic010G181100 Sobic010G150800--Sobic010G181100 Sobic002G190300 Sobic002G190300 Sobic010G150800--Sobic002G190300 Sobic001G512500 Sobic001G512500 Sobic010G150800--Sobic001G512500 Sobic010G150800--Sobic002G118200 Sobic009G219100 Sobic009G219100 Sobic010G150800--Sobic009G219100 Sobic010G150800--Sobic001G531500 Sobic009G140000 Sobic009G140000 Sobic010G150800--Sobic009G140000 Sobic004G154400 Sobic004G154400 Sobic010G150800--Sobic004G154400 Sobic010G150800--Sobic009G123900 Sobic006G145901--Sobic009G011600 Sobic006G145901--Sobic002G311200 Sobic006G145901--Sobic001G531500 Sobic001G252000 Sobic001G252000 Sobic006G145901--Sobic001G252000 Sobic010G175400 Sobic010G175400 Sobic006G145901--Sobic010G175400 Sobic005G082200 Sobic005G082200 Sobic006G145901--Sobic005G082200 Sobic002G338100 Sobic002G338100 Sobic006G145901--Sobic002G338100 Sobic001G032700 Sobic001G032700 Sobic006G145901--Sobic001G032700 Sobic003G160200 Sobic003G160200 Sobic006G145901--Sobic003G160200 Sobic004G347800 Sobic004G347800 Sobic001G305600--Sobic004G347800 Sobic005G045000 Sobic005G045000 Sobic001G305600--Sobic005G045000 Sobic001G305600--Sobic006G064100 Sobic002G273300 Sobic002G273300 Sobic001G305600--Sobic002G273300 Sobic001G484400 Sobic001G484400 Sobic001G305600--Sobic001G484400 Sobic008G168300 Sobic008G168300 Sobic001G305600--Sobic008G168300 Sobic001G305600--Sobic001G531500 Sobic003G418100 Sobic003G418100 Sobic001G305600--Sobic003G418100 Sobic010G176200 Sobic010G176200 Sobic001G305600--Sobic010G176200 Sobic001G375100 Sobic001G375100 Sobic004G070500--Sobic001G375100 Sobic007G010700 Sobic007G010700 Sobic004G070500--Sobic007G010700 Sobic003G146500 Sobic003G146500 Sobic004G070500--Sobic003G146500 Sobic004G034600 Sobic004G034600 Sobic004G070500--Sobic004G034600 Sobic004G325100 Sobic004G325100 Sobic004G070500--Sobic004G325100 Sobic002G124600 Sobic002G124600 Sobic004G070500--Sobic002G124600 Sobic003G247500 Sobic003G247500 Sobic004G070500--Sobic003G247500 Sobic007G193700 Sobic007G193700 Sobic004G070500--Sobic007G193700 Sobic005G053200 Sobic005G053200 Sobic004G070500--Sobic005G053200 Sobic002G128200 Sobic002G128200 Sobic010G227800--Sobic002G128200 Sobic007G201500 Sobic007G201500 Sobic010G227800--Sobic007G201500 Sobic010G227800--Sobic010G205100 Sobic010G217600 Sobic010G217600 Sobic010G227800--Sobic010G217600 Sobic010G227800--Sobic005G053200 Sobic010G227800--Sobic001G375100 Sobic002G305000 Sobic002G305000 Sobic010G227800--Sobic002G305000 Sobic010G227800--Sobic006G064100 Sobic003G021100 Sobic003G021100 Sobic010G227800--Sobic003G021100 Sobic002G403600--Sobic001G531500 Sobic004G027600 Sobic004G027600 Sobic002G403600--Sobic004G027600 Sobic002G403600--Sobic006G064100 Sobic002G403600--Sobic001G073900 Sobic004G356400 Sobic004G356400 Sobic002G403600--Sobic004G356400 Sobic003G036200 Sobic003G036200 Sobic002G403600--Sobic003G036200 Sobic006G120500 Sobic006G120500 Sobic002G403600--Sobic006G120500 Sobic002G403600--Sobic005G001700 Sobic010G251700 Sobic010G251700 Sobic002G403600--Sobic010G251700 Sobic009G011600--Sobic004G034600 Sobic001G517800 Sobic001G517800 Sobic009G011600--Sobic001G517800 Sobic001G496100 Sobic001G496100 Sobic009G011600--Sobic001G496100 Sobic005G149700 Sobic005G149700 Sobic009G011600--Sobic005G149700 Sobic010G020800 Sobic010G020800 Sobic009G011600--Sobic010G020800 Sobic007G169300 Sobic007G169300 Sobic009G011600--Sobic007G169300 Sobic002G249300 Sobic002G249300 Sobic009G011600--Sobic002G249300 Sobic005G149200 Sobic005G149200 Sobic009G011600--Sobic005G149200 Sobic010G043100 Sobic010G043100 Sobic009G011600--Sobic010G043100 Sobic006G064100--Sobic010G205100 Sobic006G064100--Sobic001G531500 Sobic006G064100--Sobic002G403600 Sobic006G064100--Sobic001G073900 Sobic006G064100--Sobic006G120500 Sobic004G317500 Sobic004G317500 Sobic006G064100--Sobic004G317500 Sobic006G064100--Sobic001G305600 Sobic006G064100--Sobic003G036200 Sobic010G085100 Sobic010G085100 Sobic006G064100--Sobic010G085100
Octagon: transcription factors


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