Gene annotation
Transcriptome id Sobic.001G305600.3,Sobic.001G305600.1,Sobic.001G305600.2
Synonym ATBCAT-3, Sb01g029750, BCAT3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aminotransferase domain containing protein, putative, expressed
UniProt A0A1B6QM35 , A0A1B6QM25 , A0A1B6QM15
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF46
NCBI CDD KOG0975; Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
KEGG Orthology K00826; E2.6.1.42, branched-chain amino acid aminotransferase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G65780 : branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5),branched-chain aminotransferase 3
RAP-DB (Rice) LOC_Os05g48450.1,LOC_Os05g48450.4,LOC_Os05g48450.5 : aminotransferase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a003272
Brachypodium KQK24098 , KQK24099 , KQJ97722 , KQK24100 , KQK24101
Barley HORVU1Hr1G053320.6 , HORVU1Hr1G053320.7 , HORVU1Hr1G053320.4 , HORVU1Hr1G053320.5 , HORVU1Hr1G053320.2 , HORVU1Hr1G053320.3 , HORVU1Hr1G053320.1 , HORVU1Hr1G053320.8 , HORVU1Hr1G053320.9 , HORVU1Hr1G053320.14 , HORVU1Hr1G053320.10 , HORVU1Hr1G053320.11 , HORVU1Hr1G053320.12 , HORVU1Hr1G053320.13 , HORVU4Hr1G087100.18 , HORVU4Hr1G087100.10 , HORVU4Hr1G087100.11 , HORVU4Hr1G087100.12 , HORVU4Hr1G087100.13 , HORVU4Hr1G087100.14 , HORVU4Hr1G087100.15 , HORVU4Hr1G087100.16 , HORVU4Hr1G087100.17 , HORVU4Hr1G087100.8 , HORVU4Hr1G087100.9 , HORVU4Hr1G087100.2 , HORVU4Hr1G087100.3 , HORVU4Hr1G087100.1 , HORVU4Hr1G087100.6 , HORVU4Hr1G087100.7 , HORVU4Hr1G087100.4 , HORVU4Hr1G087100.5
Wheat TraesCS5A02G531200 , TraesCS5A02G531200 , TraesCS5A02G531200 , TraesCS4B02G363000 , TraesCS1A02G208500 , TraesCS1D02G211700 , TraesCS4D02G356200 , TraesCS1B02G222500
Populus PNT26319 , PNT26323 , PNT26322 , PNT26321 , PNT26320


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cDNA sequences
Sobic.001G305600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
2 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
3 Sobic.006G064100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.002G273300 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
5 Sobic.001G484400 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
6 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
7 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
8 Sobic.003G418100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
9 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G047400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@MYB family transcription factor, putative, expressed K12133: MYB-related transcription factor LHY
11 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
12 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
13 Sobic.008G151100 protein kinase domain containing protein, expressed -
14 Sobic.001G468700 expressed protein -
15 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
16 Sobic.008G047000 actin, putative, expressed K10355: actin, other eukaryote
17 Sobic.003G021100 expressed protein -
18 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
19 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
20 Sobic.003G392900 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase


Gene co-expression network
sample Sobic001G305600 Sobic001G305600 Sobic004G347800 Sobic004G347800 Sobic001G305600--Sobic004G347800 Sobic005G045000 Sobic005G045000 Sobic001G305600--Sobic005G045000 Sobic006G064100 Sobic006G064100 Sobic001G305600--Sobic006G064100 Sobic002G273300 Sobic002G273300 Sobic001G305600--Sobic002G273300 Sobic001G484400 Sobic001G484400 Sobic001G305600--Sobic001G484400 Sobic008G168300 Sobic008G168300 Sobic001G305600--Sobic008G168300 Sobic001G531500 Sobic001G531500 Sobic001G305600--Sobic001G531500 Sobic003G418100 Sobic003G418100 Sobic001G305600--Sobic003G418100 Sobic010G176200 Sobic010G176200 Sobic001G305600--Sobic010G176200 Sobic004G347800--Sobic010G176200 Sobic003G229300 Sobic003G229300 Sobic004G347800--Sobic003G229300 Sobic004G347800--Sobic001G305600 Sobic008G130000 Sobic008G130000 Sobic004G347800--Sobic008G130000 Sobic004G356400 Sobic004G356400 Sobic004G347800--Sobic004G356400 Sobic004G347800--Sobic005G045000 Sobic003G313300 Sobic003G313300 Sobic004G347800--Sobic003G313300 Sobic003G021100 Sobic003G021100 Sobic004G347800--Sobic003G021100 Sobic006G093800 Sobic006G093800 Sobic004G347800--Sobic006G093800 Sobic005G045000--Sobic003G313300 Sobic005G045000--Sobic001G305600 Sobic001G468700 Sobic001G468700 Sobic005G045000--Sobic001G468700 Sobic003G017100 Sobic003G017100 Sobic005G045000--Sobic003G017100 Sobic004G028500 Sobic004G028500 Sobic005G045000--Sobic004G028500 Sobic003G191700 Sobic003G191700 Sobic005G045000--Sobic003G191700 Sobic005G045000--Sobic004G347800 Sobic008G151100 Sobic008G151100 Sobic005G045000--Sobic008G151100 Sobic005G045000--Sobic008G168300 Sobic010G205100 Sobic010G205100 Sobic006G064100--Sobic010G205100 Sobic006G064100--Sobic001G531500 Sobic002G403600 Sobic002G403600 Sobic006G064100--Sobic002G403600 Sobic001G073900 Sobic001G073900 Sobic006G064100--Sobic001G073900 Sobic006G120500 Sobic006G120500 Sobic006G064100--Sobic006G120500 Sobic004G317500 Sobic004G317500 Sobic006G064100--Sobic004G317500 Sobic006G064100--Sobic001G305600 Sobic003G036200 Sobic003G036200 Sobic006G064100--Sobic003G036200 Sobic010G085100 Sobic010G085100 Sobic006G064100--Sobic010G085100 Sobic004G343500 Sobic004G343500 Sobic002G273300--Sobic004G343500 Sobic007G047400 Sobic007G047400 Sobic002G273300--Sobic007G047400 Sobic009G249600 Sobic009G249600 Sobic002G273300--Sobic009G249600 Sobic001G239500 Sobic001G239500 Sobic002G273300--Sobic001G239500 Sobic002G273300--Sobic001G305600 Sobic003G004200 Sobic003G004200 Sobic002G273300--Sobic003G004200 Sobic004G351700 Sobic004G351700 Sobic002G273300--Sobic004G351700 Sobic009G054900 Sobic009G054900 Sobic002G273300--Sobic009G054900 Sobic003G009700 Sobic003G009700 Sobic002G273300--Sobic003G009700 Sobic001G065600 Sobic001G065600 Sobic001G484400--Sobic001G065600 Sobic001G484400--Sobic001G305600 Sobic001G484400--Sobic001G073900 Sobic008G115900 Sobic008G115900 Sobic001G484400--Sobic008G115900 Sobic003G443500 Sobic003G443500 Sobic001G484400--Sobic003G443500 Sobic004G327700 Sobic004G327700 Sobic001G484400--Sobic004G327700 Sobic001G484400--Sobic004G347800 Sobic006G010900 Sobic006G010900 Sobic001G484400--Sobic006G010900 Sobic008G001900 Sobic008G001900 Sobic001G484400--Sobic008G001900 Sobic004G355700 Sobic004G355700 Sobic008G168300--Sobic004G355700 Sobic001G017300 Sobic001G017300 Sobic008G168300--Sobic001G017300 Sobic002G121600 Sobic002G121600 Sobic008G168300--Sobic002G121600 Sobic008G168300--Sobic005G045000 Sobic008G168300--Sobic003G229300 Sobic008G168300--Sobic001G468700 Sobic008G168300--Sobic010G085100 Sobic008G168300--Sobic001G239500 Sobic001G514800 Sobic001G514800 Sobic008G168300--Sobic001G514800 Sobic002G118200 Sobic002G118200 Sobic001G531500--Sobic002G118200 Sobic001G531500--Sobic006G064100 Sobic001G531500--Sobic002G403600 Sobic001G531500--Sobic001G073900 Sobic001G531500--Sobic010G205100 Sobic009G123900 Sobic009G123900 Sobic001G531500--Sobic009G123900 Sobic005G001700 Sobic005G001700 Sobic001G531500--Sobic005G001700 Sobic001G531500--Sobic008G001900 Sobic003G332700 Sobic003G332700 Sobic001G531500--Sobic003G332700 Sobic003G418100--Sobic006G064100 Sobic003G418100--Sobic010G205100 Sobic003G418100--Sobic001G305600 Sobic003G418100--Sobic008G001900 Sobic002G305000 Sobic002G305000 Sobic003G418100--Sobic002G305000 Sobic003G011300 Sobic003G011300 Sobic003G418100--Sobic003G011300 Sobic003G418100--Sobic001G531500 Sobic003G354600 Sobic003G354600 Sobic003G418100--Sobic003G354600 Sobic003G418100--Sobic001G073900 Sobic010G176200--Sobic008G130000 Sobic010G176200--Sobic003G313300 Sobic010G176200--Sobic004G347800 Sobic010G176200--Sobic004G356400 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic001G333800 Sobic001G333800 Sobic010G176200--Sobic001G333800
Octagon: transcription factors


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