Gene annotation
Transcriptome id Sobic.002G338100.1
Synonym PSB29, Sb02g036270, THF1
Functional annotation THYLAKOID FORMATION1, chloroplast precursor, putative, expressed
UniProt C5XBJ0
Pfam PF11264
Panther DB PTHR34793 PTHR34793:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0010207photosystem II assembly


Orthologs (automatic annotation)
TAIR AT2G20890 : photosystem II reaction center PSB29 protein
RAP-DB (Rice) LOC_Os07g37250.1 : THYLAKOID FORMATION1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a014901 , Zm00025a048374
Brachypodium KQK15779 , KQK15778
Barley HORVU2Hr1G041260.4 , HORVU2Hr1G041260.2 , HORVU2Hr1G041260.1
Wheat TraesCS2D02G210000 , TraesCS2B02G233300 , TraesCS2A02G206100
Populus -


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cDNA sequences
Sobic.002G338100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
2 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
3 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
4 Sobic.001G176600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
6 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
7 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
8 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
9 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
10 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
11 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
12 Sobic.001G359500 cytochrome P450, putative, expressed -
13 Sobic.001G496100 - -
14 Sobic.003G388251 - K01166: ribonuclease T2
15 Sobic.003G087200 nuclease PA3, putative, expressed -
16 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
17 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
18 Sobic.010G192800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
20 Sobic.010G205200 Ser/Thr protein phosphatase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G338100 Sobic002G338100 Sobic009G207600 Sobic009G207600 Sobic002G338100--Sobic009G207600 Sobic001G504900 Sobic001G504900 Sobic002G338100--Sobic001G504900 Sobic003G398100 Sobic003G398100 Sobic002G338100--Sobic003G398100 Sobic001G176600 Sobic001G176600 Sobic002G338100--Sobic001G176600 Sobic008G153400 Sobic008G153400 Sobic002G338100--Sobic008G153400 Sobic001G474500 Sobic001G474500 Sobic002G338100--Sobic001G474500 Sobic006G091700 Sobic006G091700 Sobic002G338100--Sobic006G091700 Sobic009G034700 Sobic009G034700 Sobic002G338100--Sobic009G034700 Sobic006G181300 Sobic006G181300 Sobic002G338100--Sobic006G181300 Sobic009G207600--Sobic001G504900 Sobic009G207600--Sobic003G398100 Sobic009G207600--Sobic002G338100 Sobic008G079300 Sobic008G079300 Sobic009G207600--Sobic008G079300 Sobic009G207600--Sobic001G474500 Sobic009G207600--Sobic008G153400 Sobic001G496100 Sobic001G496100 Sobic009G207600--Sobic001G496100 Sobic009G207600--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic009G207600--Sobic003G087200 Sobic001G504900--Sobic009G207600 Sobic001G504900--Sobic003G398100 Sobic004G261900 Sobic004G261900 Sobic001G504900--Sobic004G261900 Sobic005G149700 Sobic005G149700 Sobic001G504900--Sobic005G149700 Sobic002G266000 Sobic002G266000 Sobic001G504900--Sobic002G266000 Sobic001G504900--Sobic002G338100 Sobic001G069900 Sobic001G069900 Sobic001G504900--Sobic001G069900 Sobic001G504900--Sobic006G181300 Sobic001G015500 Sobic001G015500 Sobic001G504900--Sobic001G015500 Sobic006G199000 Sobic006G199000 Sobic003G398100--Sobic006G199000 Sobic003G398100--Sobic008G153400 Sobic003G398100--Sobic009G207600 Sobic003G398100--Sobic001G504900 Sobic003G257100 Sobic003G257100 Sobic003G398100--Sobic003G257100 Sobic003G398100--Sobic001G496100 Sobic003G355600 Sobic003G355600 Sobic003G398100--Sobic003G355600 Sobic003G322700 Sobic003G322700 Sobic003G398100--Sobic003G322700 Sobic001G150600 Sobic001G150600 Sobic003G398100--Sobic001G150600 Sobic001G176600--Sobic002G338100 Sobic001G176600--Sobic001G474500 Sobic001G130000 Sobic001G130000 Sobic001G176600--Sobic001G130000 Sobic010G205500 Sobic010G205500 Sobic001G176600--Sobic010G205500 Sobic008G017800 Sobic008G017800 Sobic001G176600--Sobic008G017800 Sobic001G176600--Sobic009G034700 Sobic007G068100 Sobic007G068100 Sobic001G176600--Sobic007G068100 Sobic001G359500 Sobic001G359500 Sobic001G176600--Sobic001G359500 Sobic001G176600--Sobic001G069900 Sobic008G153400--Sobic001G150600 Sobic008G153400--Sobic006G199000 Sobic006G030700 Sobic006G030700 Sobic008G153400--Sobic006G030700 Sobic001G325200 Sobic001G325200 Sobic008G153400--Sobic001G325200 Sobic008G153400--Sobic003G398100 Sobic008G153400--Sobic003G257100 Sobic008G153400--Sobic003G087200 Sobic008G153400--Sobic006G091700 Sobic009G226300 Sobic009G226300 Sobic008G153400--Sobic009G226300 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic009G057300 Sobic009G057300 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic003G388251 Sobic003G388251 Sobic001G474500--Sobic003G388251 Sobic004G321800 Sobic004G321800 Sobic001G474500--Sobic004G321800 Sobic003G428400 Sobic003G428400 Sobic001G474500--Sobic003G428400 Sobic001G474500--Sobic001G130000 Sobic001G474500--Sobic009G034700 Sobic009G114000 Sobic009G114000 Sobic006G091700--Sobic009G114000 Sobic006G091700--Sobic003G087200 Sobic006G091700--Sobic001G150600 Sobic002G085300 Sobic002G085300 Sobic006G091700--Sobic002G085300 Sobic006G091700--Sobic001G015500 Sobic006G091700--Sobic008G153400 Sobic006G091700--Sobic006G030700 Sobic006G091700--Sobic006G199000 Sobic006G091700--Sobic001G069900 Sobic005G178100 Sobic005G178100 Sobic009G034700--Sobic005G178100 Sobic009G034700--Sobic003G388251 Sobic004G124200 Sobic004G124200 Sobic009G034700--Sobic004G124200 Sobic009G034700--Sobic001G474500 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500 Sobic006G181300--Sobic001G069900 Sobic006G181300--Sobic003G087200 Sobic006G181300--Sobic009G114000 Sobic006G181300--Sobic006G091700 Sobic006G181300--Sobic004G321800 Sobic006G181300--Sobic009G207600 Sobic006G181300--Sobic001G015500 Sobic006G181300--Sobic008G079300 Sobic006G181300--Sobic001G150600
Octagon: transcription factors


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