Gene annotation
Transcriptome id Sobic.004G063400.1
Synonym Sb04g005270, GDU4, AtGDU4
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
GDU1, putative, expressed
UniProt C5XWA1
Pfam -
Panther DB PTHR33228 PTHR33228:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24762 : glutamine dumper 4
RAP-DB (Rice) LOC_Os06g44420.1 : GDU1, putative, expressed
MaizeGDB (Corn) Zm00025a019190 , Zm00025a051717 , Zm00025a042011
Brachypodium KQK16881 , KQJ95792
Barley HORVU0Hr1G022370.1 , HORVU7Hr1G111320.1 , HORVU7Hr1G111350.1 , HORVU6Hr1G030050.1 , HORVU6Hr1G030050.2 , HORVU1Hr1G003060.2 , HORVU1Hr1G003080.1 , HORVU1Hr1G003060.1 , HORVU7Hr1G111310.1 , HORVU7Hr1G111310.2 , HORVU1Hr1G003070.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
2 Sobic.002G130000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
3 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
4 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
6 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
7 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
8 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
9 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
10 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
11 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
12 Sobic.008G182700 thaumatin, putative, expressed -
13 Sobic.003G039700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
14 Sobic.003G087200 nuclease PA3, putative, expressed -
15 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
16 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
17 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
19 Sobic.003G388251 - K01166: ribonuclease T2
20 Sobic.001G282600 transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic004G063400 Sobic004G063400 Sobic001G504900 Sobic001G504900 Sobic004G063400--Sobic001G504900 Sobic002G130000 Sobic002G130000 Sobic004G063400--Sobic002G130000 Sobic009G034700 Sobic009G034700 Sobic004G063400--Sobic009G034700 Sobic008G079300 Sobic008G079300 Sobic004G063400--Sobic008G079300 Sobic009G207600 Sobic009G207600 Sobic004G063400--Sobic009G207600 Sobic005G178100 Sobic005G178100 Sobic004G063400--Sobic005G178100 Sobic001G069900 Sobic001G069900 Sobic004G063400--Sobic001G069900 Sobic001G015500 Sobic001G015500 Sobic004G063400--Sobic001G015500 Sobic006G181300 Sobic006G181300 Sobic004G063400--Sobic006G181300 Sobic001G504900--Sobic009G207600 Sobic003G398100 Sobic003G398100 Sobic001G504900--Sobic003G398100 Sobic004G261900 Sobic004G261900 Sobic001G504900--Sobic004G261900 Sobic005G149700 Sobic005G149700 Sobic001G504900--Sobic005G149700 Sobic002G266000 Sobic002G266000 Sobic001G504900--Sobic002G266000 Sobic002G338100 Sobic002G338100 Sobic001G504900--Sobic002G338100 Sobic001G504900--Sobic001G069900 Sobic001G504900--Sobic006G181300 Sobic001G504900--Sobic001G015500 Sobic002G130000--Sobic004G063400 Sobic002G130000--Sobic001G504900 Sobic002G130000--Sobic009G034700 Sobic010G192800 Sobic010G192800 Sobic002G130000--Sobic010G192800 Sobic002G130000--Sobic009G207600 Sobic004G193000 Sobic004G193000 Sobic002G130000--Sobic004G193000 Sobic002G130000--Sobic005G178100 Sobic001G469500 Sobic001G469500 Sobic002G130000--Sobic001G469500 Sobic002G130000--Sobic006G181300 Sobic009G034700--Sobic005G178100 Sobic003G388251 Sobic003G388251 Sobic009G034700--Sobic003G388251 Sobic004G124200 Sobic004G124200 Sobic009G034700--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic009G034700--Sobic001G474500 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic001G325200 Sobic001G325200 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500 Sobic003G184900 Sobic003G184900 Sobic008G079300--Sobic003G184900 Sobic003G105800 Sobic003G105800 Sobic008G079300--Sobic003G105800 Sobic007G225900 Sobic007G225900 Sobic008G079300--Sobic007G225900 Sobic004G321800 Sobic004G321800 Sobic008G079300--Sobic004G321800 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic008G079300--Sobic009G034700 Sobic008G079300--Sobic001G474500 Sobic008G079300--Sobic001G325200 Sobic009G207600--Sobic001G504900 Sobic009G207600--Sobic003G398100 Sobic009G207600--Sobic002G338100 Sobic009G207600--Sobic008G079300 Sobic009G207600--Sobic001G474500 Sobic008G153400 Sobic008G153400 Sobic009G207600--Sobic008G153400 Sobic001G496100 Sobic001G496100 Sobic009G207600--Sobic001G496100 Sobic006G091700 Sobic006G091700 Sobic009G207600--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic009G207600--Sobic003G087200 Sobic009G161000 Sobic009G161000 Sobic005G178100--Sobic009G161000 Sobic001G305800 Sobic001G305800 Sobic005G178100--Sobic001G305800 Sobic005G178100--Sobic003G087200 Sobic002G420700 Sobic002G420700 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic005G178100--Sobic003G105800 Sobic005G178100--Sobic009G034700 Sobic005G178100--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic005G178100--Sobic001G150600 Sobic001G069900--Sobic001G015500 Sobic001G069900--Sobic006G181300 Sobic001G069900--Sobic003G087200 Sobic001G069900--Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic001G069900--Sobic009G114000 Sobic001G069900--Sobic001G150600 Sobic001G069900--Sobic005G178100 Sobic001G069900--Sobic009G034700 Sobic001G069900--Sobic001G325200 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic004G101900 Sobic004G101900 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200 Sobic006G181300--Sobic001G069900 Sobic006G181300--Sobic003G087200 Sobic006G181300--Sobic009G114000 Sobic006G181300--Sobic006G091700 Sobic006G181300--Sobic004G321800 Sobic006G181300--Sobic009G207600 Sobic006G181300--Sobic001G015500 Sobic006G181300--Sobic008G079300 Sobic006G181300--Sobic001G150600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.