Gene annotation
Transcriptome id Sobic.001G282600.1
Synonym Sb01g027800
Functional annotation transporter family protein, putative, expressed
UniProt C5WQN1
Pfam PF00083
Panther DB PTHR23500 PTHR23500:SF110
NCBI CDD KOG0254; Predicted transporter (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G17010 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os10g42830.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a018084
Brachypodium KQJ97994
Barley HORVU1Hr1G051290.1 , HORVU1Hr1G051290.2 , HORVU1Hr1G051290.3 , HORVU1Hr1G051290.4 , HORVU1Hr1G051290.5 , HORVU1Hr1G051290.6 , HORVU1Hr1G051290.7 , HORVU1Hr1G051290.8
Wheat TraesCS1A02G197200 , TraesCS1B02G211800 , TraesCS1D02G200700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
2 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
4 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
5 Sobic.007G210500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
6 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
7 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
8 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.003G322700 expressed protein -
10 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
11 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
13 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
14 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
15 Sobic.003G010600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
16 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
17 Sobic.009G193700 transmembrane protein 56, putative, expressed -
18 Sobic.010G203200 protein kinase domain containing protein, expressed -
19 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
20 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -


Gene co-expression network
sample Sobic001G282600 Sobic001G282600 Sobic002G266000 Sobic002G266000 Sobic001G282600--Sobic002G266000 Sobic006G104600 Sobic006G104600 Sobic001G282600--Sobic006G104600 Sobic006G199000 Sobic006G199000 Sobic001G282600--Sobic006G199000 Sobic004G225200 Sobic004G225200 Sobic001G282600--Sobic004G225200 Sobic007G210500 Sobic007G210500 Sobic001G282600--Sobic007G210500 Sobic004G329300 Sobic004G329300 Sobic001G282600--Sobic004G329300 Sobic008G153400 Sobic008G153400 Sobic001G282600--Sobic008G153400 Sobic003G355600 Sobic003G355600 Sobic001G282600--Sobic003G355600 Sobic003G322700 Sobic003G322700 Sobic001G282600--Sobic003G322700 Sobic002G266000--Sobic003G322700 Sobic002G266000--Sobic001G282600 Sobic002G266000--Sobic006G104600 Sobic002G249200 Sobic002G249200 Sobic002G266000--Sobic002G249200 Sobic004G261900 Sobic004G261900 Sobic002G266000--Sobic004G261900 Sobic007G004500 Sobic007G004500 Sobic002G266000--Sobic007G004500 Sobic004G034600 Sobic004G034600 Sobic002G266000--Sobic004G034600 Sobic005G149700 Sobic005G149700 Sobic002G266000--Sobic005G149700 Sobic002G266000--Sobic004G225200 Sobic006G104600--Sobic001G282600 Sobic006G104600--Sobic002G266000 Sobic003G320700 Sobic003G320700 Sobic006G104600--Sobic003G320700 Sobic001G305500 Sobic001G305500 Sobic006G104600--Sobic001G305500 Sobic002G128200 Sobic002G128200 Sobic006G104600--Sobic002G128200 Sobic006G104600--Sobic003G322700 Sobic006G104600--Sobic006G199000 Sobic006G104600--Sobic005G149700 Sobic006G104600--Sobic004G225200 Sobic006G199000--Sobic008G153400 Sobic003G398100 Sobic003G398100 Sobic006G199000--Sobic003G398100 Sobic003G257100 Sobic003G257100 Sobic006G199000--Sobic003G257100 Sobic006G199000--Sobic003G355600 Sobic001G325200 Sobic001G325200 Sobic006G199000--Sobic001G325200 Sobic001G150600 Sobic001G150600 Sobic006G199000--Sobic001G150600 Sobic001G015500 Sobic001G015500 Sobic006G199000--Sobic001G015500 Sobic006G199000--Sobic001G282600 Sobic006G091700 Sobic006G091700 Sobic006G199000--Sobic006G091700 Sobic004G225100 Sobic004G225100 Sobic004G225200--Sobic004G225100 Sobic004G225200--Sobic001G282600 Sobic004G225200--Sobic002G266000 Sobic004G225200--Sobic006G199000 Sobic004G225200--Sobic003G398100 Sobic004G225200--Sobic006G104600 Sobic004G071200 Sobic004G071200 Sobic004G225200--Sobic004G071200 Sobic004G225200--Sobic003G322700 Sobic005G178100 Sobic005G178100 Sobic004G225200--Sobic005G178100 Sobic007G210500--Sobic001G282600 Sobic002G262300 Sobic002G262300 Sobic007G210500--Sobic002G262300 Sobic009G080400 Sobic009G080400 Sobic007G210500--Sobic009G080400 Sobic010G169000 Sobic010G169000 Sobic007G210500--Sobic010G169000 Sobic007G210500--Sobic001G305500 Sobic003G051600 Sobic003G051600 Sobic007G210500--Sobic003G051600 Sobic007G210500--Sobic006G104600 Sobic001G217400 Sobic001G217400 Sobic007G210500--Sobic001G217400 Sobic007G210500--Sobic004G225200 Sobic004G329300--Sobic001G282600 Sobic004G329300--Sobic010G169000 Sobic004G329300--Sobic002G266000 Sobic004G329300--Sobic006G104600 Sobic004G329300--Sobic004G225200 Sobic009G193700 Sobic009G193700 Sobic004G329300--Sobic009G193700 Sobic004G329300--Sobic003G257100 Sobic004G329300--Sobic003G322700 Sobic004G329300--Sobic007G004500 Sobic008G153400--Sobic001G150600 Sobic008G153400--Sobic006G199000 Sobic006G030700 Sobic006G030700 Sobic008G153400--Sobic006G030700 Sobic008G153400--Sobic001G325200 Sobic008G153400--Sobic003G398100 Sobic008G153400--Sobic003G257100 Sobic003G087200 Sobic003G087200 Sobic008G153400--Sobic003G087200 Sobic008G153400--Sobic006G091700 Sobic009G226300 Sobic009G226300 Sobic008G153400--Sobic009G226300 Sobic008G062200 Sobic008G062200 Sobic003G355600--Sobic008G062200 Sobic003G355600--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G355600--Sobic002G304000 Sobic003G355600--Sobic009G226300 Sobic010G107000 Sobic010G107000 Sobic003G355600--Sobic010G107000 Sobic003G355600--Sobic006G199000 Sobic002G009700 Sobic002G009700 Sobic003G355600--Sobic002G009700 Sobic003G355600--Sobic009G193700 Sobic004G101900 Sobic004G101900 Sobic003G355600--Sobic004G101900 Sobic003G322700--Sobic002G266000 Sobic006G204900 Sobic006G204900 Sobic003G322700--Sobic006G204900 Sobic010G001500 Sobic010G001500 Sobic003G322700--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic003G322700--Sobic004G355000 Sobic001G207400 Sobic001G207400 Sobic003G322700--Sobic001G207400 Sobic003G322700--Sobic003G355600 Sobic006G087700 Sobic006G087700 Sobic003G322700--Sobic006G087700 Sobic003G322700--Sobic006G199000 Sobic003G322700--Sobic004G034600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.