Gene annotation
Transcriptome id Sobic.007G035000.1
Synonym Sb07g003010
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
decarboxylase, putative, expressed
UniProt C5YN22
Pfam PF00282
Panther DB PTHR11999 PTHR11999:SF93
NCBI CDD KOG0628; Aromatic-L-amino-acid/L-histidine decarboxylase
KEGG Orthology K01592; tyrosine decarboxylase
Gene Ontology GO:0016831; carboxy-lyase activity


Orthologs (automatic annotation)
TAIR AT2G20340 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os08g04540.1 : decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a029244 , Zm00025a055250 , Zm00025a055249
Brachypodium KQJ95025 , KQK02569 , KQJ95028 , KQJ95032
Barley HORVU2Hr1G114440.1 , HORVU3Hr1G005820.1 , HORVU3Hr1G005820.2 , HORVU3Hr1G005820.3 , HORVU2Hr1G114440.2 , HORVU7Hr1G091860.1 , HORVU7Hr1G091860.2 , HORVU4Hr1G089400.1 , HORVU4Hr1G089400.2 , HORVU1Hr1G010120.1 , HORVU1Hr1G010120.2
Wheat TraesCS6A02G388400 , TraesCS7D02G538800 , TraesCS3D02G019200 , TraesCS3B02G016900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
2 Sobic.005G216000 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
3 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
4 Sobic.003G105800 No apical meristem protein, putative, expressed -
5 Sobic.003G087200 nuclease PA3, putative, expressed -
6 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -
7 Sobic.003G244600 similar to PRm 3(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
9 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
10 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
11 Sobic.007G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
12 Sobic.007G092900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
13 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
14 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
15 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
16 Sobic.006G226400 leucoanthocyanidin reductase, putative, expressed -
17 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
19 Sobic.010G162900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
20 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase


Gene co-expression network
sample Sobic007G035000 Sobic007G035000 Sobic002G420700 Sobic002G420700 Sobic007G035000--Sobic002G420700 Sobic005G216000 Sobic005G216000 Sobic007G035000--Sobic005G216000 Sobic005G178100 Sobic005G178100 Sobic007G035000--Sobic005G178100 Sobic003G105800 Sobic003G105800 Sobic007G035000--Sobic003G105800 Sobic003G087200 Sobic003G087200 Sobic007G035000--Sobic003G087200 Sobic004G071200 Sobic004G071200 Sobic007G035000--Sobic004G071200 Sobic003G244600 Sobic003G244600 Sobic007G035000--Sobic003G244600 Sobic009G114000 Sobic009G114000 Sobic007G035000--Sobic009G114000 Sobic009G034700 Sobic009G034700 Sobic007G035000--Sobic009G034700 Sobic002G420700--Sobic005G178100 Sobic002G420700--Sobic007G035000 Sobic008G153400 Sobic008G153400 Sobic002G420700--Sobic008G153400 Sobic002G420700--Sobic003G087200 Sobic002G420700--Sobic009G114000 Sobic001G150600 Sobic001G150600 Sobic002G420700--Sobic001G150600 Sobic006G091700 Sobic006G091700 Sobic002G420700--Sobic006G091700 Sobic006G226400 Sobic006G226400 Sobic002G420700--Sobic006G226400 Sobic001G015500 Sobic001G015500 Sobic002G420700--Sobic001G015500 Sobic004G162400 Sobic004G162400 Sobic005G216000--Sobic004G162400 Sobic005G216000--Sobic007G035000 Sobic005G216000--Sobic002G420700 Sobic005G215900 Sobic005G215900 Sobic005G216000--Sobic005G215900 Sobic002G304000 Sobic002G304000 Sobic005G216000--Sobic002G304000 Sobic005G231900 Sobic005G231900 Sobic005G216000--Sobic005G231900 Sobic005G216000--Sobic003G244600 Sobic005G216000--Sobic003G105800 Sobic005G216000--Sobic005G178100 Sobic009G161000 Sobic009G161000 Sobic005G178100--Sobic009G161000 Sobic001G305800 Sobic001G305800 Sobic005G178100--Sobic001G305800 Sobic005G178100--Sobic003G087200 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic005G178100--Sobic003G105800 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic005G178100--Sobic001G150600 Sobic003G105800--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic003G105800--Sobic008G079300 Sobic004G321800 Sobic004G321800 Sobic003G105800--Sobic004G321800 Sobic001G325200 Sobic001G325200 Sobic003G105800--Sobic001G325200 Sobic003G105800--Sobic002G304000 Sobic007G225900 Sobic007G225900 Sobic003G105800--Sobic007G225900 Sobic006G100332 Sobic006G100332 Sobic003G105800--Sobic006G100332 Sobic003G105800--Sobic003G087200 Sobic009G226300 Sobic009G226300 Sobic003G105800--Sobic009G226300 Sobic003G087200--Sobic001G150600 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic006G030700 Sobic006G030700 Sobic003G087200--Sobic006G030700 Sobic003G087200--Sobic009G226300 Sobic003G087200--Sobic006G091700 Sobic003G148800 Sobic003G148800 Sobic003G087200--Sobic003G148800 Sobic003G087200--Sobic008G153400 Sobic003G087200--Sobic009G114000 Sobic004G225200 Sobic004G225200 Sobic004G071200--Sobic004G225200 Sobic004G071200--Sobic006G091700 Sobic003G398100 Sobic003G398100 Sobic004G071200--Sobic003G398100 Sobic004G071200--Sobic002G420700 Sobic004G071200--Sobic005G178100 Sobic002G266000 Sobic002G266000 Sobic004G071200--Sobic002G266000 Sobic004G071200--Sobic007G035000 Sobic004G071200--Sobic008G153400 Sobic002G085300 Sobic002G085300 Sobic004G071200--Sobic002G085300 Sobic008G189200 Sobic008G189200 Sobic003G244600--Sobic008G189200 Sobic003G244600--Sobic006G030700 Sobic003G244600--Sobic002G304000 Sobic003G244600--Sobic006G091700 Sobic003G244600--Sobic003G105800 Sobic003G244600--Sobic005G216000 Sobic007G186200 Sobic007G186200 Sobic003G244600--Sobic007G186200 Sobic003G244600--Sobic001G015500 Sobic003G244600--Sobic009G226300 Sobic009G114000--Sobic006G091700 Sobic009G114000--Sobic003G087200 Sobic009G114000--Sobic006G226400 Sobic006G181300 Sobic006G181300 Sobic009G114000--Sobic006G181300 Sobic009G114000--Sobic002G085300 Sobic009G114000--Sobic001G150600 Sobic001G069900 Sobic001G069900 Sobic009G114000--Sobic001G069900 Sobic002G122800 Sobic002G122800 Sobic009G114000--Sobic002G122800 Sobic009G114000--Sobic006G030700 Sobic009G034700--Sobic005G178100 Sobic003G388251 Sobic003G388251 Sobic009G034700--Sobic003G388251 Sobic004G124200 Sobic004G124200 Sobic009G034700--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic009G034700--Sobic001G474500 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500
Octagon: transcription factors


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