Gene annotation
Transcriptome id Sobic.010G039401.1
Synonym -
Functional annotation -
UniProt A0A1W0VRD2
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF114
NCBI CDD KOG1252; Cystathionine beta-synthase and related enzymes
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59760 : O-acetylserine (thiol) lyase isoform C
RAP-DB (Rice) LOC_Os06g36830.1 : cysteine synthase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK19850 , KQK19851 , PNT76631
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G039700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
2 Sobic.002G177300 cytochrome P450, putative, expressed -
3 Sobic.001G469500 transporter family protein, putative, expressed -
4 Sobic.007G135000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
5 Sobic.008G027200 rp1, putative, expressed -
6 Sobic.003G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
7 Sobic.009G241300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.007G157100 gibberellin receptor GID1L2, putative, expressed -
9 Sobic.010G044700 leucine zipper protein-like, putative, expressed -
10 Sobic.002G354400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyol transporter 5, putative, expressed -
11 Sobic.002G373100 strictosidine synthase, putative, expressed -
12 Sobic.006G168000 AP2 domain containing protein, expressed K09286: EREBP-like factor
13 Sobic.002G130000 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
14 Sobic.009G241400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.007G001100 DTA2, putative, expressed -
16 Sobic.010G192800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.007G084300 kelch repeat protein, putative, expressed -
18 Sobic.008G054100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
19 Sobic.001G136300 nodulin family protein, putative, expressed -
20 Sobic.008G162201 - K04730: interleukin-1 receptor-associated kinase 1


Gene co-expression network
sample Sobic010G039401 Sobic010G039401 Sobic003G039700 Sobic003G039700 Sobic010G039401--Sobic003G039700 Sobic002G177300 Sobic002G177300 Sobic010G039401--Sobic002G177300 Sobic001G469500 Sobic001G469500 Sobic010G039401--Sobic001G469500 Sobic007G135000 Sobic007G135000 Sobic010G039401--Sobic007G135000 Sobic008G027200 Sobic008G027200 Sobic010G039401--Sobic008G027200 Sobic003G022600 Sobic003G022600 Sobic010G039401--Sobic003G022600 Sobic009G241300 Sobic009G241300 Sobic010G039401--Sobic009G241300 Sobic007G157100 Sobic007G157100 Sobic010G039401--Sobic007G157100 Sobic010G044700 Sobic010G044700 Sobic010G039401--Sobic010G044700 Sobic003G039700--Sobic007G135000 Sobic001G351800 Sobic001G351800 Sobic003G039700--Sobic001G351800 Sobic007G084300 Sobic007G084300 Sobic003G039700--Sobic007G084300 Sobic003G039700--Sobic001G469500 Sobic004G063400 Sobic004G063400 Sobic003G039700--Sobic004G063400 Sobic003G039700--Sobic010G039401 Sobic008G079300 Sobic008G079300 Sobic003G039700--Sobic008G079300 Sobic003G039700--Sobic003G022600 Sobic009G034700 Sobic009G034700 Sobic003G039700--Sobic009G034700 Sobic006G168000 Sobic006G168000 Sobic002G177300--Sobic006G168000 Sobic002G354400 Sobic002G354400 Sobic002G177300--Sobic002G354400 Sobic005G133166 Sobic005G133166 Sobic002G177300--Sobic005G133166 Sobic006G246200 Sobic006G246200 Sobic002G177300--Sobic006G246200 Sobic010G210700 Sobic010G210700 Sobic002G177300--Sobic010G210700 Sobic001G362001 Sobic001G362001 Sobic002G177300--Sobic001G362001 Sobic004G340700 Sobic004G340700 Sobic002G177300--Sobic004G340700 Sobic009G241500 Sobic009G241500 Sobic002G177300--Sobic009G241500 Sobic005G082700 Sobic005G082700 Sobic002G177300--Sobic005G082700 Sobic001G469500--Sobic007G135000 Sobic001G469500--Sobic010G044700 Sobic003G363100 Sobic003G363100 Sobic001G469500--Sobic003G363100 Sobic010G192800 Sobic010G192800 Sobic001G469500--Sobic010G192800 Sobic001G469500--Sobic003G022600 Sobic001G469500--Sobic003G039700 Sobic003G097100 Sobic003G097100 Sobic001G469500--Sobic003G097100 Sobic002G130000 Sobic002G130000 Sobic001G469500--Sobic002G130000 Sobic008G009200 Sobic008G009200 Sobic001G469500--Sobic008G009200 Sobic007G135000--Sobic003G097100 Sobic007G135000--Sobic009G241300 Sobic007G135000--Sobic001G469500 Sobic007G135000--Sobic003G022600 Sobic007G135000--Sobic003G039700 Sobic009G241400 Sobic009G241400 Sobic007G135000--Sobic009G241400 Sobic007G135000--Sobic003G363100 Sobic006G242000 Sobic006G242000 Sobic007G135000--Sobic006G242000 Sobic007G135000--Sobic010G192800 Sobic002G373100 Sobic002G373100 Sobic008G027200--Sobic002G373100 Sobic008G027200--Sobic007G084300 Sobic002G072100 Sobic002G072100 Sobic008G027200--Sobic002G072100 Sobic003G080800 Sobic003G080800 Sobic008G027200--Sobic003G080800 Sobic002G118101 Sobic002G118101 Sobic008G027200--Sobic002G118101 Sobic005G045200 Sobic005G045200 Sobic008G027200--Sobic005G045200 Sobic006G060601 Sobic006G060601 Sobic008G027200--Sobic006G060601 Sobic001G053200 Sobic001G053200 Sobic008G027200--Sobic001G053200 Sobic001G275500 Sobic001G275500 Sobic008G027200--Sobic001G275500 Sobic003G022600--Sobic007G135000 Sobic003G010300 Sobic003G010300 Sobic003G022600--Sobic003G010300 Sobic003G022600--Sobic003G097100 Sobic003G022600--Sobic001G469500 Sobic003G022600--Sobic006G242000 Sobic003G022600--Sobic003G039700 Sobic003G022600--Sobic007G157100 Sobic009G016600 Sobic009G016600 Sobic003G022600--Sobic009G016600 Sobic010G137300 Sobic010G137300 Sobic003G022600--Sobic010G137300 Sobic009G241300--Sobic009G241400 Sobic009G241300--Sobic007G135000 Sobic009G241300--Sobic003G097100 Sobic009G241300--Sobic010G044700 Sobic008G162201 Sobic008G162201 Sobic009G241300--Sobic008G162201 Sobic009G241300--Sobic001G469500 Sobic009G241300--Sobic006G168000 Sobic007G001100 Sobic007G001100 Sobic009G241300--Sobic007G001100 Sobic002G064500 Sobic002G064500 Sobic009G241300--Sobic002G064500 Sobic001G136300 Sobic001G136300 Sobic007G157100--Sobic001G136300 Sobic007G157100--Sobic005G133166 Sobic007G157100--Sobic006G246200 Sobic007G157100--Sobic009G241500 Sobic007G157100--Sobic008G162201 Sobic009G037200 Sobic009G037200 Sobic007G157100--Sobic009G037200 Sobic007G157100--Sobic005G082700 Sobic007G157100--Sobic006G168000 Sobic008G067500 Sobic008G067500 Sobic007G157100--Sobic008G067500 Sobic010G044700--Sobic001G469500 Sobic010G044700--Sobic009G241300 Sobic010G044700--Sobic007G135000 Sobic010G044700--Sobic008G009200 Sobic010G044700--Sobic009G241400 Sobic010G044700--Sobic003G039700 Sobic010G044700--Sobic003G363100 Sobic010G044700--Sobic007G001100 Sobic009G012900 Sobic009G012900 Sobic010G044700--Sobic009G012900
Octagon: transcription factors


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