Gene annotation
Transcriptome id Sobic.003G022600.1
Synonym CAT5, Sb03g002130
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
amino acid permease family protein, putative, expressed
UniProt C5XL43
Pfam PF13906 PF00324
Panther DB PTHR11785 PTHR11785:SF267
NCBI CDD KOG1286; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT2G34960 : cationic amino acid transporter 5
RAP-DB (Rice) LOC_Os01g11160.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022942 , Zm00025a007295 , Zm00025a025366
Brachypodium KQK14010 , KQK03264 , KQJ91402 , KQJ85804
Barley HORVU3Hr1G028860.2 , HORVU5Hr1G093090.2 , HORVU3Hr1G028860.1 , HORVU5Hr1G071780.1 , HORVU5Hr1G071780.2 , HORVU5Hr1G071780.3
Wheat TraesCS5A02G375600 , TraesCS5D02G385125
Populus -


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cDNA sequences
Sobic.003G022600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G135000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
2 Sobic.003G010300 cytochrome P450, putative, expressed -
3 Sobic.003G097100 receptor kinase ORK10, putative, expressed -
4 Sobic.001G469500 transporter family protein, putative, expressed -
5 Sobic.006G242000 oryzain beta chain precursor, putative, expressed -
6 Sobic.003G039700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
7 Sobic.007G157100 gibberellin receptor GID1L2, putative, expressed -
8 Sobic.009G016600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.010G137300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine-rich receptor-like protein kinase 10 precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
10 Sobic.003G314500 expressed protein -
11 Sobic.010G192800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G392400 expressed protein -
13 Sobic.007G084300 kelch repeat protein, putative, expressed -
14 Sobic.002G373100 strictosidine synthase, putative, expressed -
15 Sobic.005G133166 - -
16 Sobic.005G032300 ubiquitin-like protein 5, putative, expressed K13113: UBL5, ubiquitin-like protein 5
17 Sobic.007G063300 reductase, putative, expressed -
18 Sobic.006G143000 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
19 Sobic.002G273700 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
20 Sobic.009G213800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G022600 Sobic003G022600 Sobic007G135000 Sobic007G135000 Sobic003G022600--Sobic007G135000 Sobic003G010300 Sobic003G010300 Sobic003G022600--Sobic003G010300 Sobic003G097100 Sobic003G097100 Sobic003G022600--Sobic003G097100 Sobic001G469500 Sobic001G469500 Sobic003G022600--Sobic001G469500 Sobic006G242000 Sobic006G242000 Sobic003G022600--Sobic006G242000 Sobic003G039700 Sobic003G039700 Sobic003G022600--Sobic003G039700 Sobic007G157100 Sobic007G157100 Sobic003G022600--Sobic007G157100 Sobic009G016600 Sobic009G016600 Sobic003G022600--Sobic009G016600 Sobic010G137300 Sobic010G137300 Sobic003G022600--Sobic010G137300 Sobic007G135000--Sobic003G097100 Sobic009G241300 Sobic009G241300 Sobic007G135000--Sobic009G241300 Sobic007G135000--Sobic001G469500 Sobic007G135000--Sobic003G022600 Sobic007G135000--Sobic003G039700 Sobic009G241400 Sobic009G241400 Sobic007G135000--Sobic009G241400 Sobic003G363100 Sobic003G363100 Sobic007G135000--Sobic003G363100 Sobic007G135000--Sobic006G242000 Sobic010G192800 Sobic010G192800 Sobic007G135000--Sobic010G192800 Sobic003G010300--Sobic003G022600 Sobic003G010300--Sobic010G192800 Sobic003G010300--Sobic009G016600 Sobic002G140700 Sobic002G140700 Sobic003G010300--Sobic002G140700 Sobic006G076800 Sobic006G076800 Sobic003G010300--Sobic006G076800 Sobic007G063300 Sobic007G063300 Sobic003G010300--Sobic007G063300 Sobic004G059300 Sobic004G059300 Sobic003G010300--Sobic004G059300 Sobic003G010300--Sobic007G135000 Sobic003G074500 Sobic003G074500 Sobic003G010300--Sobic003G074500 Sobic003G097100--Sobic007G135000 Sobic003G097100--Sobic006G242000 Sobic003G097100--Sobic009G241300 Sobic006G028100 Sobic006G028100 Sobic003G097100--Sobic006G028100 Sobic001G320200 Sobic001G320200 Sobic003G097100--Sobic001G320200 Sobic003G097100--Sobic009G241400 Sobic003G097100--Sobic003G022600 Sobic003G097100--Sobic001G469500 Sobic002G130700 Sobic002G130700 Sobic003G097100--Sobic002G130700 Sobic001G469500--Sobic007G135000 Sobic010G044700 Sobic010G044700 Sobic001G469500--Sobic010G044700 Sobic001G469500--Sobic003G363100 Sobic001G469500--Sobic010G192800 Sobic001G469500--Sobic003G022600 Sobic001G469500--Sobic003G039700 Sobic001G469500--Sobic003G097100 Sobic002G130000 Sobic002G130000 Sobic001G469500--Sobic002G130000 Sobic008G009200 Sobic008G009200 Sobic001G469500--Sobic008G009200 Sobic006G242000--Sobic003G097100 Sobic006G242000--Sobic006G028100 Sobic002G217200 Sobic002G217200 Sobic006G242000--Sobic002G217200 Sobic004G174100 Sobic004G174100 Sobic006G242000--Sobic004G174100 Sobic006G242000--Sobic007G135000 Sobic006G242000--Sobic002G130700 Sobic006G242000--Sobic003G022600 Sobic005G064800 Sobic005G064800 Sobic006G242000--Sobic005G064800 Sobic006G242000--Sobic001G320200 Sobic003G039700--Sobic007G135000 Sobic001G351800 Sobic001G351800 Sobic003G039700--Sobic001G351800 Sobic007G084300 Sobic007G084300 Sobic003G039700--Sobic007G084300 Sobic003G039700--Sobic001G469500 Sobic004G063400 Sobic004G063400 Sobic003G039700--Sobic004G063400 Sobic010G039401 Sobic010G039401 Sobic003G039700--Sobic010G039401 Sobic008G079300 Sobic008G079300 Sobic003G039700--Sobic008G079300 Sobic003G039700--Sobic003G022600 Sobic009G034700 Sobic009G034700 Sobic003G039700--Sobic009G034700 Sobic001G136300 Sobic001G136300 Sobic007G157100--Sobic001G136300 Sobic005G133166 Sobic005G133166 Sobic007G157100--Sobic005G133166 Sobic006G246200 Sobic006G246200 Sobic007G157100--Sobic006G246200 Sobic009G241500 Sobic009G241500 Sobic007G157100--Sobic009G241500 Sobic008G162201 Sobic008G162201 Sobic007G157100--Sobic008G162201 Sobic009G037200 Sobic009G037200 Sobic007G157100--Sobic009G037200 Sobic005G082700 Sobic005G082700 Sobic007G157100--Sobic005G082700 Sobic006G168000 Sobic006G168000 Sobic007G157100--Sobic006G168000 Sobic008G067500 Sobic008G067500 Sobic007G157100--Sobic008G067500 Sobic009G016600--Sobic010G192800 Sobic009G016600--Sobic007G084300 Sobic009G211000 Sobic009G211000 Sobic009G016600--Sobic009G211000 Sobic002G249300 Sobic002G249300 Sobic009G016600--Sobic002G249300 Sobic002G165140 Sobic002G165140 Sobic009G016600--Sobic002G165140 Sobic006G143000 Sobic006G143000 Sobic009G016600--Sobic006G143000 Sobic009G016600--Sobic007G063300 Sobic003G174301 Sobic003G174301 Sobic009G016600--Sobic003G174301 Sobic009G226600 Sobic009G226600 Sobic009G016600--Sobic009G226600 Sobic010G137300--Sobic009G241400 Sobic006G213500 Sobic006G213500 Sobic010G137300--Sobic006G213500 Sobic010G137300--Sobic010G192800 Sobic005G171300 Sobic005G171300 Sobic010G137300--Sobic005G171300 Sobic010G137300--Sobic003G022600 Sobic005G203300 Sobic005G203300 Sobic010G137300--Sobic005G203300 Sobic010G137300--Sobic003G174301 Sobic010G137300--Sobic007G135000 Sobic006G148500 Sobic006G148500 Sobic010G137300--Sobic006G148500
Octagon: transcription factors


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