Gene annotation
Transcriptome id Sobic.001G392400.1
Synonym Sb01g037180
Functional annotation expressed protein
UniProt C5WMD5
Pfam -
Panther DB PTHR33726 PTHR33726:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49525 : -
RAP-DB (Rice) LOC_Os03g19940.1 : expressed protein
MaizeGDB (Corn) Zm00025a002205
Brachypodium KQK21956
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
2 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.007G135000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
4 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
5 Sobic.006G242000 oryzain beta chain precursor, putative, expressed -
6 Sobic.003G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
7 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
8 Sobic.003G069500 regulator of ribonuclease, putative, expressed -
9 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.003G039700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
11 Sobic.003G097100 receptor kinase ORK10, putative, expressed -
12 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
13 Sobic.004G182600 expressed protein -
14 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
15 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
16 Sobic.004G063400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDU1, putative, expressed -
17 Sobic.004G153501 - -
18 Sobic.009G016600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.002G046800 transketolase, putative, expressed K00167: BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit
20 Sobic.001G320200 phospholipase D, putative, expressed K01115: phospholipase D1/2


Gene co-expression network
sample Sobic001G392400 Sobic001G392400 Sobic006G028100 Sobic006G028100 Sobic001G392400--Sobic006G028100 Sobic008G079300 Sobic008G079300 Sobic001G392400--Sobic008G079300 Sobic007G135000 Sobic007G135000 Sobic001G392400--Sobic007G135000 Sobic004G345800 Sobic004G345800 Sobic001G392400--Sobic004G345800 Sobic006G242000 Sobic006G242000 Sobic001G392400--Sobic006G242000 Sobic003G022600 Sobic003G022600 Sobic001G392400--Sobic003G022600 Sobic009G034700 Sobic009G034700 Sobic001G392400--Sobic009G034700 Sobic003G069500 Sobic003G069500 Sobic001G392400--Sobic003G069500 Sobic001G130000 Sobic001G130000 Sobic001G392400--Sobic001G130000 Sobic006G028100--Sobic006G242000 Sobic004G182600 Sobic004G182600 Sobic006G028100--Sobic004G182600 Sobic006G028100--Sobic004G345800 Sobic006G028100--Sobic001G130000 Sobic003G097100 Sobic003G097100 Sobic006G028100--Sobic003G097100 Sobic003G061800 Sobic003G061800 Sobic006G028100--Sobic003G061800 Sobic006G028100--Sobic001G392400 Sobic002G315800 Sobic002G315800 Sobic006G028100--Sobic002G315800 Sobic006G157600 Sobic006G157600 Sobic006G028100--Sobic006G157600 Sobic003G184900 Sobic003G184900 Sobic008G079300--Sobic003G184900 Sobic003G105800 Sobic003G105800 Sobic008G079300--Sobic003G105800 Sobic007G225900 Sobic007G225900 Sobic008G079300--Sobic007G225900 Sobic004G321800 Sobic004G321800 Sobic008G079300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic008G079300--Sobic009G207600 Sobic005G178100 Sobic005G178100 Sobic008G079300--Sobic005G178100 Sobic008G079300--Sobic009G034700 Sobic001G474500 Sobic001G474500 Sobic008G079300--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic008G079300--Sobic001G325200 Sobic007G135000--Sobic003G097100 Sobic009G241300 Sobic009G241300 Sobic007G135000--Sobic009G241300 Sobic001G469500 Sobic001G469500 Sobic007G135000--Sobic001G469500 Sobic007G135000--Sobic003G022600 Sobic003G039700 Sobic003G039700 Sobic007G135000--Sobic003G039700 Sobic009G241400 Sobic009G241400 Sobic007G135000--Sobic009G241400 Sobic003G363100 Sobic003G363100 Sobic007G135000--Sobic003G363100 Sobic007G135000--Sobic006G242000 Sobic010G192800 Sobic010G192800 Sobic007G135000--Sobic010G192800 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic004G345800--Sobic003G184900 Sobic003G388251 Sobic003G388251 Sobic004G345800--Sobic003G388251 Sobic004G345800--Sobic008G079300 Sobic007G068100 Sobic007G068100 Sobic004G345800--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G345800--Sobic004G321800 Sobic006G242000--Sobic003G097100 Sobic006G242000--Sobic006G028100 Sobic002G217200 Sobic002G217200 Sobic006G242000--Sobic002G217200 Sobic004G174100 Sobic004G174100 Sobic006G242000--Sobic004G174100 Sobic006G242000--Sobic007G135000 Sobic002G130700 Sobic002G130700 Sobic006G242000--Sobic002G130700 Sobic006G242000--Sobic003G022600 Sobic005G064800 Sobic005G064800 Sobic006G242000--Sobic005G064800 Sobic001G320200 Sobic001G320200 Sobic006G242000--Sobic001G320200 Sobic003G022600--Sobic007G135000 Sobic003G010300 Sobic003G010300 Sobic003G022600--Sobic003G010300 Sobic003G022600--Sobic003G097100 Sobic003G022600--Sobic001G469500 Sobic003G022600--Sobic006G242000 Sobic003G022600--Sobic003G039700 Sobic007G157100 Sobic007G157100 Sobic003G022600--Sobic007G157100 Sobic009G016600 Sobic009G016600 Sobic003G022600--Sobic009G016600 Sobic010G137300 Sobic010G137300 Sobic003G022600--Sobic010G137300 Sobic009G034700--Sobic005G178100 Sobic009G034700--Sobic003G388251 Sobic004G124200 Sobic004G124200 Sobic009G034700--Sobic004G124200 Sobic009G034700--Sobic001G474500 Sobic001G069900 Sobic001G069900 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic009G034700--Sobic001G015500 Sobic002G046800 Sobic002G046800 Sobic003G069500--Sobic002G046800 Sobic004G153501 Sobic004G153501 Sobic003G069500--Sobic004G153501 Sobic006G138400 Sobic006G138400 Sobic003G069500--Sobic006G138400 Sobic004G153400 Sobic004G153400 Sobic003G069500--Sobic004G153400 Sobic003G069500--Sobic003G061800 Sobic004G052900 Sobic004G052900 Sobic003G069500--Sobic004G052900 Sobic004G349400 Sobic004G349400 Sobic003G069500--Sobic004G349400 Sobic006G214500 Sobic006G214500 Sobic003G069500--Sobic006G214500 Sobic006G003400 Sobic006G003400 Sobic003G069500--Sobic006G003400 Sobic001G130000--Sobic001G474500 Sobic001G130000--Sobic009G034700 Sobic001G130000--Sobic007G068100 Sobic001G130000--Sobic003G388251 Sobic001G130000--Sobic001G325200 Sobic001G130000--Sobic001G069900 Sobic001G130000--Sobic008G079300 Sobic008G017800 Sobic008G017800 Sobic001G130000--Sobic008G017800 Sobic001G130000--Sobic004G345800
Octagon: transcription factors


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