Gene annotation
Transcriptome id Sobic.006G242000.2,Sobic.006G242000.3,Sobic.006G242000.1
Synonym RD21A, RD21, Sb06g030800
Functional annotation oryzain beta chain precursor, putative, expressed
UniProt A0A1B6PNM1 , A0A1B6PNL9 , A0A1B6PNM7
Pfam PF00396 PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF344
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G47128 : Granulin repeat cysteine protease family protein
RAP-DB (Rice) LOC_Os04g57440.1 : oryzain beta chain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a027044 , Zm00025a015300 , Zm00025a057208 , Zm00025a009525 , Zm00025a031098
Brachypodium PNT62012 , KQJ84974
Barley HORVU2Hr1G113460.8 , HORVU2Hr1G113460.1 , HORVU2Hr1G113460.2 , HORVU2Hr1G113460.5 , HORVU2Hr1G113460.3 , HORVU2Hr1G113460.7 , HORVU2Hr1G113460.6 , HORVU2Hr1G113460.4
Wheat TraesCS2D02G513600 , TraesCS2B02G540100 , TraesCS2B02G540100 , TraesCS2A02G512100
Populus -


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cDNA sequences
Sobic.006G242000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G097100 receptor kinase ORK10, putative, expressed -
2 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
3 Sobic.002G217200 oryzain gamma chain precursor, putative, expressed K01366: cathepsin H
4 Sobic.004G174100 expressed protein -
5 Sobic.007G135000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
6 Sobic.002G130700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed -
7 Sobic.003G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
8 Sobic.005G064800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
9 Sobic.001G320200 phospholipase D, putative, expressed K01115: phospholipase D1/2
10 Sobic.007G073700 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
11 Sobic.001G392400 expressed protein -
12 Sobic.004G068800 cytochrome P450 71D10, putative, expressed -
13 Sobic.005G133166 - -
14 Sobic.003G206800 DUF538 domain containing protein, putative, expressed -
15 Sobic.002G259600 no apical meristem protein, putative, expressed -
16 Sobic.001G427200 josephin, putative, expressed K15235: josephin
17 Sobic.001G340700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@EARLY flowering protein, putative, expressed -
18 Sobic.004G142800 similar to Cysteine proteinase 1 precursor(PubMedID : 29862293)@"As a homologous gene of the drought stress-responsive gene RD19 of Arabidopsis, SbRD19 overexpression in Arabidopsis improved the drought tolerance of plants relative to wild-type plants."(PubMedID : 32112957)@cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
19 Sobic.002G315800 Papain family cysteine protease domain containing protein, expressed K01363: cathepsin B
20 Sobic.004G131040 - K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX


Gene co-expression network
sample Sobic006G242000 Sobic006G242000 Sobic003G097100 Sobic003G097100 Sobic006G242000--Sobic003G097100 Sobic006G028100 Sobic006G028100 Sobic006G242000--Sobic006G028100 Sobic002G217200 Sobic002G217200 Sobic006G242000--Sobic002G217200 Sobic004G174100 Sobic004G174100 Sobic006G242000--Sobic004G174100 Sobic007G135000 Sobic007G135000 Sobic006G242000--Sobic007G135000 Sobic002G130700 Sobic002G130700 Sobic006G242000--Sobic002G130700 Sobic003G022600 Sobic003G022600 Sobic006G242000--Sobic003G022600 Sobic005G064800 Sobic005G064800 Sobic006G242000--Sobic005G064800 Sobic001G320200 Sobic001G320200 Sobic006G242000--Sobic001G320200 Sobic003G097100--Sobic007G135000 Sobic003G097100--Sobic006G242000 Sobic009G241300 Sobic009G241300 Sobic003G097100--Sobic009G241300 Sobic003G097100--Sobic006G028100 Sobic003G097100--Sobic001G320200 Sobic009G241400 Sobic009G241400 Sobic003G097100--Sobic009G241400 Sobic003G097100--Sobic003G022600 Sobic001G469500 Sobic001G469500 Sobic003G097100--Sobic001G469500 Sobic003G097100--Sobic002G130700 Sobic006G028100--Sobic006G242000 Sobic004G182600 Sobic004G182600 Sobic006G028100--Sobic004G182600 Sobic004G345800 Sobic004G345800 Sobic006G028100--Sobic004G345800 Sobic001G130000 Sobic001G130000 Sobic006G028100--Sobic001G130000 Sobic006G028100--Sobic003G097100 Sobic003G061800 Sobic003G061800 Sobic006G028100--Sobic003G061800 Sobic001G392400 Sobic001G392400 Sobic006G028100--Sobic001G392400 Sobic002G315800 Sobic002G315800 Sobic006G028100--Sobic002G315800 Sobic006G157600 Sobic006G157600 Sobic006G028100--Sobic006G157600 Sobic004G142800 Sobic004G142800 Sobic002G217200--Sobic004G142800 Sobic006G024500 Sobic006G024500 Sobic002G217200--Sobic006G024500 Sobic002G217200--Sobic006G242000 Sobic004G131040 Sobic004G131040 Sobic002G217200--Sobic004G131040 Sobic001G275500 Sobic001G275500 Sobic002G217200--Sobic001G275500 Sobic009G213800 Sobic009G213800 Sobic002G217200--Sobic009G213800 Sobic009G062800 Sobic009G062800 Sobic002G217200--Sobic009G062800 Sobic002G181300 Sobic002G181300 Sobic002G217200--Sobic002G181300 Sobic010G000600 Sobic010G000600 Sobic002G217200--Sobic010G000600 Sobic001G427200 Sobic001G427200 Sobic004G174100--Sobic001G427200 Sobic004G174100--Sobic006G242000 Sobic004G174100--Sobic002G130700 Sobic004G174100--Sobic005G064800 Sobic001G022600 Sobic001G022600 Sobic004G174100--Sobic001G022600 Sobic002G193400 Sobic002G193400 Sobic004G174100--Sobic002G193400 Sobic008G142600 Sobic008G142600 Sobic004G174100--Sobic008G142600 Sobic004G293000 Sobic004G293000 Sobic004G174100--Sobic004G293000 Sobic004G253900 Sobic004G253900 Sobic004G174100--Sobic004G253900 Sobic007G135000--Sobic003G097100 Sobic007G135000--Sobic009G241300 Sobic007G135000--Sobic001G469500 Sobic007G135000--Sobic003G022600 Sobic003G039700 Sobic003G039700 Sobic007G135000--Sobic003G039700 Sobic007G135000--Sobic009G241400 Sobic003G363100 Sobic003G363100 Sobic007G135000--Sobic003G363100 Sobic007G135000--Sobic006G242000 Sobic010G192800 Sobic010G192800 Sobic007G135000--Sobic010G192800 Sobic009G034800 Sobic009G034800 Sobic002G130700--Sobic009G034800 Sobic004G275200 Sobic004G275200 Sobic002G130700--Sobic004G275200 Sobic005G129400 Sobic005G129400 Sobic002G130700--Sobic005G129400 Sobic002G130700--Sobic004G174100 Sobic002G130700--Sobic006G242000 Sobic002G027700 Sobic002G027700 Sobic002G130700--Sobic002G027700 Sobic009G245700 Sobic009G245700 Sobic002G130700--Sobic009G245700 Sobic002G130700--Sobic001G427200 Sobic002G241400 Sobic002G241400 Sobic002G130700--Sobic002G241400 Sobic003G022600--Sobic007G135000 Sobic003G010300 Sobic003G010300 Sobic003G022600--Sobic003G010300 Sobic003G022600--Sobic003G097100 Sobic003G022600--Sobic001G469500 Sobic003G022600--Sobic006G242000 Sobic003G022600--Sobic003G039700 Sobic007G157100 Sobic007G157100 Sobic003G022600--Sobic007G157100 Sobic009G016600 Sobic009G016600 Sobic003G022600--Sobic009G016600 Sobic010G137300 Sobic010G137300 Sobic003G022600--Sobic010G137300 Sobic004G202700 Sobic004G202700 Sobic005G064800--Sobic004G202700 Sobic007G073700 Sobic007G073700 Sobic005G064800--Sobic007G073700 Sobic007G029100 Sobic007G029100 Sobic005G064800--Sobic007G029100 Sobic009G190800 Sobic009G190800 Sobic005G064800--Sobic009G190800 Sobic005G064800--Sobic004G174100 Sobic005G064800--Sobic004G142800 Sobic001G416300 Sobic001G416300 Sobic005G064800--Sobic001G416300 Sobic005G064800--Sobic006G242000 Sobic002G339500 Sobic002G339500 Sobic005G064800--Sobic002G339500 Sobic010G018100 Sobic010G018100 Sobic001G320200--Sobic010G018100 Sobic001G320200--Sobic003G097100 Sobic003G206800 Sobic003G206800 Sobic001G320200--Sobic003G206800 Sobic003G365000 Sobic003G365000 Sobic001G320200--Sobic003G365000 Sobic001G320200--Sobic006G028100 Sobic003G200100 Sobic003G200100 Sobic001G320200--Sobic003G200100 Sobic001G320200--Sobic001G130000 Sobic001G320200--Sobic007G135000 Sobic001G320200--Sobic006G242000
Octagon: transcription factors


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