Gene annotation
Transcriptome id Sobic.002G130700.1
Synonym SAG12, Sb02g011230
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
thiol protease SEN102 precursor, putative, expressed
UniProt C5X5T3 , Q84YE7
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF337
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L KOG1542Cysteine proteinase Cathepsin F
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G45890 : senescence-associated gene 12
RAP-DB (Rice) LOC_Os09g38920.1 : thiol protease SEN102 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a014258 , Zm00025a013528 , Zm00025a002948 , Zm00025a016788 , Zm00025a021807
Brachypodium KQK16258 , KQK15435 , KQJ90836 , KQJ88596
Barley HORVU3Hr1G091800.1 , HORVU5Hr1G074780.3 , HORVU5Hr1G074780.2 , HORVU4Hr1G012700.4 , HORVU4Hr1G012700.5 , HORVU4Hr1G012700.2 , HORVU4Hr1G012700.3 , HORVU4Hr1G012700.1 , HORVU5Hr1G074780.1
Wheat TraesCS5B02G274600 , TraesCS6D02G144000 , TraesCS4B02G076200 , TraesCS4B02G076200 , TraesCS4D02G074800 , TraesCS4D02G074800 , TraesCS5D02G282500 , TraesCS4A02G238600 , TraesCS4A02G238600 , TraesCS6B02G182200 , TraesCS6A02G154300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G130700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G034800 WRKY5, expressed -
2 Sobic.004G275200 zinc-binding protein, putative, expressed -
3 Sobic.005G129400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G174100 expressed protein -
5 Sobic.006G242000 oryzain beta chain precursor, putative, expressed -
6 Sobic.002G027700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@wound and phytochrome signaling involved receptor like kinase, putative, expressed -
7 Sobic.009G245700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G427200 josephin, putative, expressed K15235: josephin
9 Sobic.002G241400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.005G103700 - -
11 Sobic.003G097100 receptor kinase ORK10, putative, expressed -
12 Sobic.005G229400 GRAS family transcription factor domain containing protein, expressed -
13 Sobic.004G067200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.003G206800 DUF538 domain containing protein, putative, expressed -
15 Sobic.002G339500 diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
16 Sobic.001G319100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.006G174600 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
18 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
19 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
20 Sobic.006G246300 protein kinase, putative, expressed -


Gene co-expression network
sample Sobic002G130700 Sobic002G130700 Sobic009G034800 Sobic009G034800 Sobic002G130700--Sobic009G034800 Sobic004G275200 Sobic004G275200 Sobic002G130700--Sobic004G275200 Sobic005G129400 Sobic005G129400 Sobic002G130700--Sobic005G129400 Sobic004G174100 Sobic004G174100 Sobic002G130700--Sobic004G174100 Sobic006G242000 Sobic006G242000 Sobic002G130700--Sobic006G242000 Sobic002G027700 Sobic002G027700 Sobic002G130700--Sobic002G027700 Sobic009G245700 Sobic009G245700 Sobic002G130700--Sobic009G245700 Sobic001G427200 Sobic001G427200 Sobic002G130700--Sobic001G427200 Sobic002G241400 Sobic002G241400 Sobic002G130700--Sobic002G241400 Sobic009G034800--Sobic002G130700 Sobic009G034800--Sobic002G027700 Sobic009G034800--Sobic004G174100 Sobic007G158500 Sobic007G158500 Sobic009G034800--Sobic007G158500 Sobic005G103700 Sobic005G103700 Sobic009G034800--Sobic005G103700 Sobic001G319100 Sobic001G319100 Sobic009G034800--Sobic001G319100 Sobic002G216500 Sobic002G216500 Sobic009G034800--Sobic002G216500 Sobic004G174000 Sobic004G174000 Sobic009G034800--Sobic004G174000 Sobic002G067300 Sobic002G067300 Sobic009G034800--Sobic002G067300 Sobic006G152600 Sobic006G152600 Sobic004G275200--Sobic006G152600 Sobic007G148200 Sobic007G148200 Sobic004G275200--Sobic007G148200 Sobic001G293800 Sobic001G293800 Sobic004G275200--Sobic001G293800 Sobic008G094700 Sobic008G094700 Sobic004G275200--Sobic008G094700 Sobic004G275200--Sobic002G130700 Sobic003G308700 Sobic003G308700 Sobic004G275200--Sobic003G308700 Sobic001G377000 Sobic001G377000 Sobic004G275200--Sobic001G377000 Sobic004G275200--Sobic005G129400 Sobic009G080200 Sobic009G080200 Sobic004G275200--Sobic009G080200 Sobic005G129400--Sobic006G152600 Sobic005G129400--Sobic004G275200 Sobic001G123000 Sobic001G123000 Sobic005G129400--Sobic001G123000 Sobic005G129400--Sobic002G130700 Sobic008G001400 Sobic008G001400 Sobic005G129400--Sobic008G001400 Sobic005G129400--Sobic009G245700 Sobic005G129400--Sobic007G148200 Sobic001G427500 Sobic001G427500 Sobic005G129400--Sobic001G427500 Sobic010G084000 Sobic010G084000 Sobic005G129400--Sobic010G084000 Sobic004G174100--Sobic001G427200 Sobic004G174100--Sobic006G242000 Sobic004G174100--Sobic002G130700 Sobic005G064800 Sobic005G064800 Sobic004G174100--Sobic005G064800 Sobic001G022600 Sobic001G022600 Sobic004G174100--Sobic001G022600 Sobic002G193400 Sobic002G193400 Sobic004G174100--Sobic002G193400 Sobic008G142600 Sobic008G142600 Sobic004G174100--Sobic008G142600 Sobic004G293000 Sobic004G293000 Sobic004G174100--Sobic004G293000 Sobic004G253900 Sobic004G253900 Sobic004G174100--Sobic004G253900 Sobic003G097100 Sobic003G097100 Sobic006G242000--Sobic003G097100 Sobic006G028100 Sobic006G028100 Sobic006G242000--Sobic006G028100 Sobic002G217200 Sobic002G217200 Sobic006G242000--Sobic002G217200 Sobic006G242000--Sobic004G174100 Sobic007G135000 Sobic007G135000 Sobic006G242000--Sobic007G135000 Sobic006G242000--Sobic002G130700 Sobic003G022600 Sobic003G022600 Sobic006G242000--Sobic003G022600 Sobic006G242000--Sobic005G064800 Sobic001G320200 Sobic001G320200 Sobic006G242000--Sobic001G320200 Sobic002G027700--Sobic002G130700 Sobic002G027700--Sobic009G034800 Sobic002G073900 Sobic002G073900 Sobic002G027700--Sobic002G073900 Sobic004G349300 Sobic004G349300 Sobic002G027700--Sobic004G349300 Sobic001G233200 Sobic001G233200 Sobic002G027700--Sobic001G233200 Sobic003G385500 Sobic003G385500 Sobic002G027700--Sobic003G385500 Sobic002G027700--Sobic002G193400 Sobic001G387000 Sobic001G387000 Sobic002G027700--Sobic001G387000 Sobic002G048800 Sobic002G048800 Sobic002G027700--Sobic002G048800 Sobic003G264901 Sobic003G264901 Sobic009G245700--Sobic003G264901 Sobic006G053700 Sobic006G053700 Sobic009G245700--Sobic006G053700 Sobic009G245700--Sobic001G293800 Sobic004G096300 Sobic004G096300 Sobic009G245700--Sobic004G096300 Sobic009G245700--Sobic004G275200 Sobic009G245700--Sobic005G129400 Sobic009G245700--Sobic007G148200 Sobic009G245700--Sobic004G349300 Sobic009G245700--Sobic002G130700 Sobic003G436300 Sobic003G436300 Sobic001G427200--Sobic003G436300 Sobic003G217400 Sobic003G217400 Sobic001G427200--Sobic003G217400 Sobic001G427200--Sobic004G174100 Sobic003G077900 Sobic003G077900 Sobic001G427200--Sobic003G077900 Sobic002G251700 Sobic002G251700 Sobic001G427200--Sobic002G251700 Sobic010G090900 Sobic010G090900 Sobic001G427200--Sobic010G090900 Sobic003G116900 Sobic003G116900 Sobic001G427200--Sobic003G116900 Sobic005G044800 Sobic005G044800 Sobic001G427200--Sobic005G044800 Sobic003G299000 Sobic003G299000 Sobic001G427200--Sobic003G299000 Sobic002G241400--Sobic008G094700 Sobic002G241400--Sobic002G130700 Sobic005G217200 Sobic005G217200 Sobic002G241400--Sobic005G217200 Sobic004G067200 Sobic004G067200 Sobic002G241400--Sobic004G067200 Sobic008G074700 Sobic008G074700 Sobic002G241400--Sobic008G074700 Sobic001G236200 Sobic001G236200 Sobic002G241400--Sobic001G236200 Sobic001G385800 Sobic001G385800 Sobic002G241400--Sobic001G385800 Sobic001G180900 Sobic001G180900 Sobic002G241400--Sobic001G180900 Sobic005G091600 Sobic005G091600 Sobic002G241400--Sobic005G091600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.