Gene annotation
Transcriptome id Sobic.009G245700.1
Synonym Sb09g029660
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5YWG0
Pfam -
Panther DB PTHR33640 PTHR33640:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66440 : -
RAP-DB (Rice) LOC_Os05g50470.1 : expressed protein
MaizeGDB (Corn) Zm00025a044715
Brachypodium PNT70654
Barley HORVU1Hr1G091670.2 , HORVU1Hr1G091670.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G264901 - -
2 Sobic.006G053700 ACT domain containing protein, expressed -
3 Sobic.001G293800 chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed K01177: beta-amylase
4 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
5 Sobic.004G275200 zinc-binding protein, putative, expressed -
6 Sobic.005G129400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.007G148200 auxin-repressed protein, putative, expressed -
8 Sobic.004G349300 tyrosine protein kinase domain containing protein, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
9 Sobic.002G130700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thiol protease SEN102 precursor, putative, expressed -
10 Sobic.005G093400 expressed protein -
11 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
12 Sobic.002G174900 cysteine desulfurase 1, mitochondrial precursor, putative, expressed K04487: iscS, cysteine desulfurase
13 Sobic.003G013600 expressed protein -
14 Sobic.003G065600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
15 Sobic.001G377000 auxin-repressed protein, putative, expressed -
16 Sobic.003G151800 expressed protein -
17 Sobic.008G001400 expressed protein -
18 Sobic.001G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
19 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
20 Sobic.003G408400 PCF-like (ClassI) Subclade 3 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic009G245700 Sobic009G245700 Sobic003G264901 Sobic003G264901 Sobic009G245700--Sobic003G264901 Sobic006G053700 Sobic006G053700 Sobic009G245700--Sobic006G053700 Sobic001G293800 Sobic001G293800 Sobic009G245700--Sobic001G293800 Sobic004G096300 Sobic004G096300 Sobic009G245700--Sobic004G096300 Sobic004G275200 Sobic004G275200 Sobic009G245700--Sobic004G275200 Sobic005G129400 Sobic005G129400 Sobic009G245700--Sobic005G129400 Sobic007G148200 Sobic007G148200 Sobic009G245700--Sobic007G148200 Sobic004G349300 Sobic004G349300 Sobic009G245700--Sobic004G349300 Sobic002G130700 Sobic002G130700 Sobic009G245700--Sobic002G130700 Sobic003G264901--Sobic004G096300 Sobic010G172200 Sobic010G172200 Sobic003G264901--Sobic010G172200 Sobic003G264901--Sobic001G293800 Sobic003G264901--Sobic006G053700 Sobic007G071000 Sobic007G071000 Sobic003G264901--Sobic007G071000 Sobic001G377000 Sobic001G377000 Sobic003G264901--Sobic001G377000 Sobic009G205600 Sobic009G205600 Sobic003G264901--Sobic009G205600 Sobic003G153800 Sobic003G153800 Sobic003G264901--Sobic003G153800 Sobic001G053900 Sobic001G053900 Sobic003G264901--Sobic001G053900 Sobic006G053700--Sobic004G096300 Sobic006G053700--Sobic010G172200 Sobic007G014600 Sobic007G014600 Sobic006G053700--Sobic007G014600 Sobic009G213400 Sobic009G213400 Sobic006G053700--Sobic009G213400 Sobic006G053700--Sobic003G264901 Sobic002G209100 Sobic002G209100 Sobic006G053700--Sobic002G209100 Sobic002G271600 Sobic002G271600 Sobic006G053700--Sobic002G271600 Sobic001G005500 Sobic001G005500 Sobic006G053700--Sobic001G005500 Sobic007G191900 Sobic007G191900 Sobic006G053700--Sobic007G191900 Sobic001G293800--Sobic004G096300 Sobic001G293800--Sobic003G264901 Sobic001G293800--Sobic001G377000 Sobic001G293800--Sobic010G172200 Sobic001G293800--Sobic003G153800 Sobic001G293800--Sobic007G071000 Sobic001G293800--Sobic004G275200 Sobic001G293800--Sobic006G053700 Sobic001G225400 Sobic001G225400 Sobic001G293800--Sobic001G225400 Sobic004G096300--Sobic010G172200 Sobic004G096300--Sobic001G293800 Sobic004G096300--Sobic001G377000 Sobic004G096300--Sobic009G213400 Sobic004G096300--Sobic003G264901 Sobic004G096300--Sobic006G053700 Sobic004G096300--Sobic001G053900 Sobic004G096300--Sobic007G014600 Sobic008G152200 Sobic008G152200 Sobic004G096300--Sobic008G152200 Sobic006G152600 Sobic006G152600 Sobic004G275200--Sobic006G152600 Sobic004G275200--Sobic007G148200 Sobic004G275200--Sobic001G293800 Sobic008G094700 Sobic008G094700 Sobic004G275200--Sobic008G094700 Sobic004G275200--Sobic002G130700 Sobic003G308700 Sobic003G308700 Sobic004G275200--Sobic003G308700 Sobic004G275200--Sobic001G377000 Sobic004G275200--Sobic005G129400 Sobic009G080200 Sobic009G080200 Sobic004G275200--Sobic009G080200 Sobic005G129400--Sobic006G152600 Sobic005G129400--Sobic004G275200 Sobic001G123000 Sobic001G123000 Sobic005G129400--Sobic001G123000 Sobic005G129400--Sobic002G130700 Sobic008G001400 Sobic008G001400 Sobic005G129400--Sobic008G001400 Sobic005G129400--Sobic009G245700 Sobic005G129400--Sobic007G148200 Sobic001G427500 Sobic001G427500 Sobic005G129400--Sobic001G427500 Sobic010G084000 Sobic010G084000 Sobic005G129400--Sobic010G084000 Sobic007G148200--Sobic001G377000 Sobic007G148200--Sobic004G275200 Sobic002G226000 Sobic002G226000 Sobic007G148200--Sobic002G226000 Sobic007G148200--Sobic006G152600 Sobic007G148200--Sobic001G293800 Sobic007G120401 Sobic007G120401 Sobic007G148200--Sobic007G120401 Sobic004G153400 Sobic004G153400 Sobic007G148200--Sobic004G153400 Sobic002G046800 Sobic002G046800 Sobic007G148200--Sobic002G046800 Sobic004G153501 Sobic004G153501 Sobic007G148200--Sobic004G153501 Sobic005G093400 Sobic005G093400 Sobic004G349300--Sobic005G093400 Sobic004G349300--Sobic009G245700 Sobic001G258000 Sobic001G258000 Sobic004G349300--Sobic001G258000 Sobic001G528300 Sobic001G528300 Sobic004G349300--Sobic001G528300 Sobic002G193400 Sobic002G193400 Sobic004G349300--Sobic002G193400 Sobic002G117200 Sobic002G117200 Sobic004G349300--Sobic002G117200 Sobic003G402200 Sobic003G402200 Sobic004G349300--Sobic003G402200 Sobic002G027700 Sobic002G027700 Sobic004G349300--Sobic002G027700 Sobic004G349300--Sobic009G205600 Sobic009G034800 Sobic009G034800 Sobic002G130700--Sobic009G034800 Sobic002G130700--Sobic004G275200 Sobic002G130700--Sobic005G129400 Sobic004G174100 Sobic004G174100 Sobic002G130700--Sobic004G174100 Sobic006G242000 Sobic006G242000 Sobic002G130700--Sobic006G242000 Sobic002G130700--Sobic002G027700 Sobic002G130700--Sobic009G245700 Sobic001G427200 Sobic001G427200 Sobic002G130700--Sobic001G427200 Sobic002G241400 Sobic002G241400 Sobic002G130700--Sobic002G241400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.