Gene annotation
| Transcriptome id | Sobic.007G148200.1,Sobic.007G148200.2 |
|---|---|
| Synonym | Sb07g022240 |
| Functional annotation | auxin-repressed protein, putative, expressed |
| UniProt | A0A1B6PHV8 , A0A1B6PHW5 |
| Pfam | PF05564 |
| Panther DB | PTHR33565 PTHR33565:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G56220 : Dormancy/auxin associated family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g26620.1 : auxin-repressed protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005768 |
| Brachypodium | KQJ98537 , KQJ98538 |
| Barley | HORVU7Hr1G019510.11 , HORVU7Hr1G019510.10 , HORVU7Hr1G019510.9 , HORVU7Hr1G019510.8 , HORVU7Hr1G019510.5 , HORVU7Hr1G019510.4 , HORVU7Hr1G019510.7 , HORVU7Hr1G019510.6 , HORVU7Hr1G019510.1 , HORVU7Hr1G019510.3 , HORVU7Hr1G019510.2 |
| Wheat | TraesCS7D02G082500 , TraesCS7A02G087600 , TraesCS7A02G087500 , TraesCS4A02G386400 , TraesCS5B02G212300 , TraesCS7D02G082600 |
| Populus | - |
JBrowse
| Sobic.007G148200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G377000 | auxin-repressed protein, putative, expressed | - |
| 2 | Sobic.004G275200 | zinc-binding protein, putative, expressed | - |
| 3 | Sobic.002G226000 | leucine-rich repeat family protein, putative, expressed | - |
| 4 | Sobic.006G152600 | - | - |
| 5 | Sobic.001G293800 | chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed | K01177: beta-amylase |
| 6 | Sobic.007G120401 | - | - |
| 7 | Sobic.004G153400 | OsFBK7 - F-box domain and kelch repeat containing protein, expressed | - |
| 8 | Sobic.002G046800 | transketolase, putative, expressed | K00167: BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit |
| 9 | Sobic.004G153501 | - | - |
| 10 | Sobic.002G174900 | cysteine desulfurase 1, mitochondrial precursor, putative, expressed | K04487: iscS, cysteine desulfurase |
| 11 | Sobic.009G213400 | mitochondrial carrier protein, putative, expressed | K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 |
| 12 | Sobic.001G191200 | a marker of bud dormancy(PubMedID : 16443694)@auxin-repressed protein, putative, expressed | - |
| 13 | Sobic.004G096300 | protein phosphatase 2C, putative, expressed | - |
| 14 | Sobic.001G225400 | expressed protein | - |
| 15 | Sobic.009G245700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.005G129400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.003G324000 | 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed | K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase |
| 18 | Sobic.003G085700 | expressed protein | - |
| 19 | Sobic.001G084700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 20 | Sobic.003G408400 | PCF-like (ClassI) Subclade 3 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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