Gene annotation
Transcriptome id Sobic.002G046800.1
Synonym Sb02g003970, BCDHBETA1
Functional annotation transketolase, putative, expressed
UniProt C5XAC7
Pfam PF02780 PF02779
Panther DB PTHR11624 PTHR11624:SF21
NCBI CDD -
KEGG Orthology K00167; BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G55510 : branched-chain alpha-keto acid decarboxylase E1 beta subunit
RAP-DB (Rice) LOC_Os07g07470.1 : transketolase, putative, expressed
MaizeGDB (Corn) Zm00025a016099
Brachypodium KQK20705
Barley HORVU5Hr1G114960.2 , HORVU5Hr1G114960.3 , HORVU5Hr1G114960.1 , HORVU5Hr1G114960.6 , HORVU5Hr1G114960.4 , HORVU5Hr1G114960.5 , HORVU5Hr1G114960.8 , HORVU5Hr1G114960.9 , HORVU6Hr1G006560.1 , HORVU6Hr1G006560.3 , HORVU6Hr1G006560.2 , HORVU6Hr1G006560.5 , HORVU6Hr1G006560.4 , HORVU6Hr1G006560.7 , HORVU6Hr1G006560.6 , HORVU5Hr1G114960.10 , HORVU6Hr1G017000.1
Wheat TraesCS6D02G041600 , TraesCS6A02G036000 , TraesCS6B02G050600
Populus -


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cDNA sequences
Sobic.002G046800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G153501 - -
2 Sobic.003G069500 regulator of ribonuclease, putative, expressed -
3 Sobic.006G138400 regulatory subunit, putative, expressed -
4 Sobic.004G153400 OsFBK7 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.001G535800 DNA methyltransferase protein, putative, expressed -
6 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
7 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
8 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
9 Sobic.009G249200 transmembrane protein, putative, expressed -
10 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
11 Sobic.007G148200 auxin-repressed protein, putative, expressed -
12 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
13 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
14 Sobic.010G001500 AML1, putative, expressed -
15 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
16 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
17 Sobic.005G072500 amino acid transporter, putative, expressed -
18 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
19 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
20 Sobic.001G159700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic002G046800 Sobic002G046800 Sobic004G153501 Sobic004G153501 Sobic002G046800--Sobic004G153501 Sobic003G069500 Sobic003G069500 Sobic002G046800--Sobic003G069500 Sobic006G138400 Sobic006G138400 Sobic002G046800--Sobic006G138400 Sobic004G153400 Sobic004G153400 Sobic002G046800--Sobic004G153400 Sobic001G535800 Sobic001G535800 Sobic002G046800--Sobic001G535800 Sobic006G214500 Sobic006G214500 Sobic002G046800--Sobic006G214500 Sobic001G543800 Sobic001G543800 Sobic002G046800--Sobic001G543800 Sobic004G052900 Sobic004G052900 Sobic002G046800--Sobic004G052900 Sobic009G249200 Sobic009G249200 Sobic002G046800--Sobic009G249200 Sobic004G153501--Sobic004G153400 Sobic004G153501--Sobic002G046800 Sobic004G153501--Sobic006G138400 Sobic004G153501--Sobic003G069500 Sobic003G093300 Sobic003G093300 Sobic004G153501--Sobic003G093300 Sobic001G123000 Sobic001G123000 Sobic004G153501--Sobic001G123000 Sobic007G148200 Sobic007G148200 Sobic004G153501--Sobic007G148200 Sobic001G048766 Sobic001G048766 Sobic004G153501--Sobic001G048766 Sobic007G190333 Sobic007G190333 Sobic004G153501--Sobic007G190333 Sobic003G069500--Sobic002G046800 Sobic003G069500--Sobic004G153501 Sobic003G069500--Sobic006G138400 Sobic003G069500--Sobic004G153400 Sobic003G061800 Sobic003G061800 Sobic003G069500--Sobic003G061800 Sobic003G069500--Sobic004G052900 Sobic004G349400 Sobic004G349400 Sobic003G069500--Sobic004G349400 Sobic003G069500--Sobic006G214500 Sobic006G003400 Sobic006G003400 Sobic003G069500--Sobic006G003400 Sobic006G138400--Sobic006G214500 Sobic003G408500 Sobic003G408500 Sobic006G138400--Sobic003G408500 Sobic009G121100 Sobic009G121100 Sobic006G138400--Sobic009G121100 Sobic006G138400--Sobic002G046800 Sobic003G407300 Sobic003G407300 Sobic006G138400--Sobic003G407300 Sobic010G001500 Sobic010G001500 Sobic006G138400--Sobic010G001500 Sobic008G009900 Sobic008G009900 Sobic006G138400--Sobic008G009900 Sobic007G024700 Sobic007G024700 Sobic006G138400--Sobic007G024700 Sobic003G005800 Sobic003G005800 Sobic006G138400--Sobic003G005800 Sobic004G153400--Sobic004G153501 Sobic004G153400--Sobic002G046800 Sobic004G153400--Sobic003G093300 Sobic001G111500 Sobic001G111500 Sobic004G153400--Sobic001G111500 Sobic004G153400--Sobic001G123000 Sobic002G226000 Sobic002G226000 Sobic004G153400--Sobic002G226000 Sobic001G111366 Sobic001G111366 Sobic004G153400--Sobic001G111366 Sobic004G153400--Sobic007G148200 Sobic009G235900 Sobic009G235900 Sobic004G153400--Sobic009G235900 Sobic007G172400 Sobic007G172400 Sobic001G535800--Sobic007G172400 Sobic001G535800--Sobic003G408500 Sobic001G498600 Sobic001G498600 Sobic001G535800--Sobic001G498600 Sobic009G083900 Sobic009G083900 Sobic001G535800--Sobic009G083900 Sobic004G216500 Sobic004G216500 Sobic001G535800--Sobic004G216500 Sobic003G100800 Sobic003G100800 Sobic001G535800--Sobic003G100800 Sobic006G245400 Sobic006G245400 Sobic001G535800--Sobic006G245400 Sobic001G088100 Sobic001G088100 Sobic001G535800--Sobic001G088100 Sobic010G153700 Sobic010G153700 Sobic001G535800--Sobic010G153700 Sobic006G214500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic006G214500--Sobic001G443900 Sobic006G214500--Sobic003G408500 Sobic008G160700 Sobic008G160700 Sobic006G214500--Sobic008G160700 Sobic010G078100 Sobic010G078100 Sobic006G214500--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic001G447500 Sobic001G447500 Sobic006G214500--Sobic001G447500 Sobic006G214500--Sobic009G249200 Sobic010G001600 Sobic010G001600 Sobic001G543800--Sobic010G001600 Sobic005G177800 Sobic005G177800 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic006G124900 Sobic006G124900 Sobic001G543800--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic001G543800--Sobic001G194900 Sobic004G196700 Sobic004G196700 Sobic001G543800--Sobic004G196700 Sobic008G024600 Sobic008G024600 Sobic001G543800--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic003G109100 Sobic003G109100 Sobic004G052900--Sobic003G109100 Sobic004G052900--Sobic007G024700 Sobic004G052900--Sobic003G100800 Sobic004G052900--Sobic007G172400 Sobic002G340100 Sobic002G340100 Sobic004G052900--Sobic002G340100 Sobic002G419800 Sobic002G419800 Sobic004G052900--Sobic002G419800 Sobic004G052900--Sobic006G245400 Sobic001G248300 Sobic001G248300 Sobic004G052900--Sobic001G248300 Sobic009G094300 Sobic009G094300 Sobic004G052900--Sobic009G094300 Sobic009G249200--Sobic007G024700 Sobic001G409600 Sobic001G409600 Sobic009G249200--Sobic001G409600 Sobic006G237400 Sobic006G237400 Sobic009G249200--Sobic006G237400 Sobic009G166300 Sobic009G166300 Sobic009G249200--Sobic009G166300 Sobic004G021100 Sobic004G021100 Sobic009G249200--Sobic004G021100 Sobic010G205800 Sobic010G205800 Sobic009G249200--Sobic010G205800 Sobic009G249200--Sobic003G408500 Sobic002G315200 Sobic002G315200 Sobic009G249200--Sobic002G315200 Sobic009G027300 Sobic009G027300 Sobic009G249200--Sobic009G027300
Octagon: transcription factors


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