Gene annotation
Transcriptome id Sobic.001G159700.11,Sobic.001G159700.12,Sobic.001G159700.6,Sobic.001G159700.14,Sobic.001G159700.8,Sobic.001G159700.13,Sobic.001G159700.3,Sobic.001G159700.15,Sobic.001G159700.2,Sobic.001G159700.4,Sobic.001G159700.7,Sobic.001G159700.10,Sobic.001G159700.9,Sobic.001G159700.5
Synonym Sb01g013920
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
transporter family protein, putative, expressed
UniProt A0A1Z5S5U1 , A0A1Z5S5T3 , A0A1Z5S5S7 , A0A1Z5S5V0 , C5WS30
Pfam PF00083
Panther DB PTHR24064 PTHR24064:SF287
NCBI CDD KOG0253; Synaptic vesicle transporter SV2 (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G13050 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os03g43720.1,LOC_Os03g43720.4,LOC_Os03g43720.3,LOC_Os03g43720.7,LOC_Os03g43720.2 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007325
Brachypodium PNT74396 , KQK14040 , KQK14048 , KQK14041 , KQK14042 , KQK14043 , KQK14044 , KQK14045 , KQK14046 , KQK14047 , KQK14039
Barley HORVU5Hr1G093390.4 , HORVU5Hr1G093390.3 , HORVU5Hr1G093390.2 , HORVU5Hr1G093390.1 , HORVU5Hr1G093350.12 , HORVU5Hr1G093350.11 , HORVU5Hr1G093350.10 , HORVU5Hr1G093350.15 , HORVU5Hr1G093350.14 , HORVU5Hr1G093350.19 , HORVU5Hr1G093350.16 , HORVU5Hr1G093350.3 , HORVU5Hr1G093350.2 , HORVU5Hr1G093350.6 , HORVU5Hr1G093350.5 , HORVU5Hr1G093350.4 , HORVU5Hr1G093350.9 , HORVU5Hr1G093350.8
Wheat TraesCS5B02G380500 , TraesCS5B02G380600 , TraesCS5B02G380600 , TraesCS5B02G380600 , TraesCS5B02G380600 , TraesCS5B02G380600 , TraesCS5A02G376900 , TraesCS5D02G386900 , TraesCS5D02G387000 , TraesCS5D02G387000 , TraesCS5D02G387000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G121100 expressed protein -
2 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
3 Sobic.006G138400 regulatory subunit, putative, expressed -
4 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
5 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
6 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
7 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
8 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
9 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
10 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
11 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
12 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
13 Sobic.002G046800 transketolase, putative, expressed K00167: BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit
14 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
15 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
16 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
17 Sobic.009G135800 CUE domain containing protein, expressed -
18 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
19 Sobic.006G124900 MA3 domain containing protein, expressed -
20 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2


Gene co-expression network
sample Sobic001G159700 Sobic001G159700 Sobic009G121100 Sobic009G121100 Sobic001G159700--Sobic009G121100 Sobic006G214500 Sobic006G214500 Sobic001G159700--Sobic006G214500 Sobic006G138400 Sobic006G138400 Sobic001G159700--Sobic006G138400 Sobic003G408500 Sobic003G408500 Sobic001G159700--Sobic003G408500 Sobic001G443900 Sobic001G443900 Sobic001G159700--Sobic001G443900 Sobic001G543800 Sobic001G543800 Sobic001G159700--Sobic001G543800 Sobic003G005800 Sobic003G005800 Sobic001G159700--Sobic003G005800 Sobic002G303000 Sobic002G303000 Sobic001G159700--Sobic002G303000 Sobic008G160700 Sobic008G160700 Sobic001G159700--Sobic008G160700 Sobic009G121100--Sobic006G214500 Sobic003G407300 Sobic003G407300 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic001G156100 Sobic001G156100 Sobic009G121100--Sobic001G156100 Sobic009G121100--Sobic001G443900 Sobic001G373200 Sobic001G373200 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic004G295800 Sobic004G295800 Sobic009G121100--Sobic004G295800 Sobic009G121100--Sobic002G303000 Sobic006G214500--Sobic009G121100 Sobic006G214500--Sobic001G443900 Sobic006G214500--Sobic003G408500 Sobic006G214500--Sobic008G160700 Sobic006G214500--Sobic010G078100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic001G447500 Sobic001G447500 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200 Sobic006G138400--Sobic006G214500 Sobic006G138400--Sobic003G408500 Sobic006G138400--Sobic009G121100 Sobic002G046800 Sobic002G046800 Sobic006G138400--Sobic002G046800 Sobic006G138400--Sobic003G407300 Sobic010G001500 Sobic010G001500 Sobic006G138400--Sobic010G001500 Sobic008G009900 Sobic008G009900 Sobic006G138400--Sobic008G009900 Sobic007G024700 Sobic007G024700 Sobic006G138400--Sobic007G024700 Sobic006G138400--Sobic003G005800 Sobic009G166300 Sobic009G166300 Sobic003G408500--Sobic009G166300 Sobic005G045300 Sobic005G045300 Sobic003G408500--Sobic005G045300 Sobic001G512700 Sobic001G512700 Sobic003G408500--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic003G408500--Sobic004G205600 Sobic007G217000 Sobic007G217000 Sobic003G408500--Sobic007G217000 Sobic003G397800 Sobic003G397800 Sobic003G408500--Sobic003G397800 Sobic004G021100 Sobic004G021100 Sobic003G408500--Sobic004G021100 Sobic001G109800 Sobic001G109800 Sobic003G408500--Sobic001G109800 Sobic004G067700 Sobic004G067700 Sobic003G408500--Sobic004G067700 Sobic001G443900--Sobic006G214500 Sobic001G443900--Sobic009G121100 Sobic001G443900--Sobic003G005800 Sobic001G443900--Sobic001G373200 Sobic001G443900--Sobic003G407300 Sobic001G443900--Sobic006G138400 Sobic001G443900--Sobic001G447500 Sobic001G443900--Sobic001G156100 Sobic009G229800 Sobic009G229800 Sobic001G443900--Sobic009G229800 Sobic010G001600 Sobic010G001600 Sobic001G543800--Sobic010G001600 Sobic005G177800 Sobic005G177800 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic006G124900 Sobic006G124900 Sobic001G543800--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic001G543800--Sobic001G194900 Sobic004G196700 Sobic004G196700 Sobic001G543800--Sobic004G196700 Sobic008G024600 Sobic008G024600 Sobic001G543800--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic002G188500 Sobic002G188500 Sobic003G005800--Sobic002G188500 Sobic003G005800--Sobic001G443900 Sobic009G235900 Sobic009G235900 Sobic003G005800--Sobic009G235900 Sobic003G005800--Sobic008G160700 Sobic004G037900 Sobic004G037900 Sobic003G005800--Sobic004G037900 Sobic003G005800--Sobic006G138400 Sobic003G005800--Sobic001G194900 Sobic003G005800--Sobic009G121100 Sobic003G005800--Sobic006G214500 Sobic002G303000--Sobic010G078100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic002G303000--Sobic003G407300 Sobic002G303000--Sobic009G040700 Sobic005G007800 Sobic005G007800 Sobic002G303000--Sobic005G007800 Sobic002G303000--Sobic004G196700 Sobic002G303000--Sobic009G235900 Sobic002G303000--Sobic008G024600 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000
Octagon: transcription factors


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