Gene annotation
Transcriptome id Sobic.003G069500.1
Synonym Sb03g005890
Functional annotation regulator of ribonuclease, putative, expressed
UniProt A0A2U9QI19 , C5XPX9
Pfam PF03737
Panther DB PTHR33254 PTHR33254:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G16450 : Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
RAP-DB (Rice) LOC_Os01g52460.2 : regulator of ribonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a023434
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G069500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G046800 transketolase, putative, expressed K00167: BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit
2 Sobic.004G153501 - -
3 Sobic.006G138400 regulatory subunit, putative, expressed -
4 Sobic.004G153400 OsFBK7 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
6 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
7 Sobic.004G349400 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
9 Sobic.006G003400 expressed protein -
10 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
11 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
12 Sobic.007G007000 DUF250 domain containing protein, putative, expressed K15356: VRG4, GDP-mannose transporter
13 Sobic.003G109100 decarboxylase, putative, expressed K01634: SGPL1, sphinganine-1-phosphate aldolase
14 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
15 Sobic.010G001500 AML1, putative, expressed -
16 Sobic.001G392400 expressed protein -
17 Sobic.009G119200 "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
18 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
19 Sobic.007G026500 OsFBK21 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase


Gene co-expression network
sample Sobic003G069500 Sobic003G069500 Sobic002G046800 Sobic002G046800 Sobic003G069500--Sobic002G046800 Sobic004G153501 Sobic004G153501 Sobic003G069500--Sobic004G153501 Sobic006G138400 Sobic006G138400 Sobic003G069500--Sobic006G138400 Sobic004G153400 Sobic004G153400 Sobic003G069500--Sobic004G153400 Sobic003G061800 Sobic003G061800 Sobic003G069500--Sobic003G061800 Sobic004G052900 Sobic004G052900 Sobic003G069500--Sobic004G052900 Sobic004G349400 Sobic004G349400 Sobic003G069500--Sobic004G349400 Sobic006G214500 Sobic006G214500 Sobic003G069500--Sobic006G214500 Sobic006G003400 Sobic006G003400 Sobic003G069500--Sobic006G003400 Sobic002G046800--Sobic004G153501 Sobic002G046800--Sobic003G069500 Sobic002G046800--Sobic006G138400 Sobic002G046800--Sobic004G153400 Sobic001G535800 Sobic001G535800 Sobic002G046800--Sobic001G535800 Sobic002G046800--Sobic006G214500 Sobic001G543800 Sobic001G543800 Sobic002G046800--Sobic001G543800 Sobic002G046800--Sobic004G052900 Sobic009G249200 Sobic009G249200 Sobic002G046800--Sobic009G249200 Sobic004G153501--Sobic004G153400 Sobic004G153501--Sobic002G046800 Sobic004G153501--Sobic006G138400 Sobic004G153501--Sobic003G069500 Sobic003G093300 Sobic003G093300 Sobic004G153501--Sobic003G093300 Sobic001G123000 Sobic001G123000 Sobic004G153501--Sobic001G123000 Sobic007G148200 Sobic007G148200 Sobic004G153501--Sobic007G148200 Sobic001G048766 Sobic001G048766 Sobic004G153501--Sobic001G048766 Sobic007G190333 Sobic007G190333 Sobic004G153501--Sobic007G190333 Sobic006G138400--Sobic006G214500 Sobic003G408500 Sobic003G408500 Sobic006G138400--Sobic003G408500 Sobic009G121100 Sobic009G121100 Sobic006G138400--Sobic009G121100 Sobic006G138400--Sobic002G046800 Sobic003G407300 Sobic003G407300 Sobic006G138400--Sobic003G407300 Sobic010G001500 Sobic010G001500 Sobic006G138400--Sobic010G001500 Sobic008G009900 Sobic008G009900 Sobic006G138400--Sobic008G009900 Sobic007G024700 Sobic007G024700 Sobic006G138400--Sobic007G024700 Sobic003G005800 Sobic003G005800 Sobic006G138400--Sobic003G005800 Sobic004G153400--Sobic004G153501 Sobic004G153400--Sobic002G046800 Sobic004G153400--Sobic003G093300 Sobic001G111500 Sobic001G111500 Sobic004G153400--Sobic001G111500 Sobic004G153400--Sobic001G123000 Sobic002G226000 Sobic002G226000 Sobic004G153400--Sobic002G226000 Sobic001G111366 Sobic001G111366 Sobic004G153400--Sobic001G111366 Sobic004G153400--Sobic007G148200 Sobic009G235900 Sobic009G235900 Sobic004G153400--Sobic009G235900 Sobic009G057300 Sobic009G057300 Sobic003G061800--Sobic009G057300 Sobic004G345800 Sobic004G345800 Sobic003G061800--Sobic004G345800 Sobic003G354400 Sobic003G354400 Sobic003G061800--Sobic003G354400 Sobic001G474500 Sobic001G474500 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G388251 Sobic003G388251 Sobic003G061800--Sobic003G388251 Sobic007G068100 Sobic007G068100 Sobic003G061800--Sobic007G068100 Sobic003G329400 Sobic003G329400 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic003G109100 Sobic003G109100 Sobic004G052900--Sobic003G109100 Sobic004G052900--Sobic007G024700 Sobic003G100800 Sobic003G100800 Sobic004G052900--Sobic003G100800 Sobic007G172400 Sobic007G172400 Sobic004G052900--Sobic007G172400 Sobic002G340100 Sobic002G340100 Sobic004G052900--Sobic002G340100 Sobic002G419800 Sobic002G419800 Sobic004G052900--Sobic002G419800 Sobic006G245400 Sobic006G245400 Sobic004G052900--Sobic006G245400 Sobic001G248300 Sobic001G248300 Sobic004G052900--Sobic001G248300 Sobic009G094300 Sobic009G094300 Sobic004G052900--Sobic009G094300 Sobic004G349400--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic004G349400--Sobic004G355000 Sobic003G322700 Sobic003G322700 Sobic004G349400--Sobic003G322700 Sobic001G290000 Sobic001G290000 Sobic004G349400--Sobic001G290000 Sobic004G349400--Sobic003G407300 Sobic004G053700 Sobic004G053700 Sobic004G349400--Sobic004G053700 Sobic002G009700 Sobic002G009700 Sobic004G349400--Sobic002G009700 Sobic004G349400--Sobic004G052900 Sobic004G349400--Sobic006G214500 Sobic006G214500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic006G214500--Sobic001G443900 Sobic006G214500--Sobic003G408500 Sobic008G160700 Sobic008G160700 Sobic006G214500--Sobic008G160700 Sobic010G078100 Sobic010G078100 Sobic006G214500--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic001G447500 Sobic001G447500 Sobic006G214500--Sobic001G447500 Sobic006G214500--Sobic009G249200 Sobic006G003400--Sobic004G052900 Sobic006G003400--Sobic001G248300 Sobic006G003400--Sobic002G340100 Sobic006G003400--Sobic004G355000 Sobic006G003400--Sobic006G138400 Sobic001G292200 Sobic001G292200 Sobic006G003400--Sobic001G292200 Sobic001G178700 Sobic001G178700 Sobic006G003400--Sobic001G178700 Sobic002G032700 Sobic002G032700 Sobic006G003400--Sobic002G032700 Sobic006G003400--Sobic003G407300
Octagon: transcription factors


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