Gene annotation
Transcriptome id Sobic.006G003400.1
Synonym Sb06g000500
Functional annotation expressed protein
UniProt C5YBA2
Pfam PF05978
Panther DB PTHR23294 PTHR23294:SF25
NCBI CDD KOG3098; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18000 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os04g01520.1 : expressed protein
MaizeGDB (Corn) Zm00025a055486
Brachypodium KQJ81670
Barley HORVU2Hr1G005470.3 , HORVU2Hr1G005470.1 , HORVU2Hr1G005470.6 , HORVU2Hr1G005470.7 , HORVU2Hr1G005470.4 , HORVU2Hr1G005470.5 , HORVU2Hr1G005470.8 , HORVU2Hr1G005470.9 , HORVU2Hr1G005470.10
Wheat TraesCS6D02G345200 , TraesCS2B02G049700 , TraesCS2D02G035700 , TraesCS2A02G036400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
2 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
3 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein
4 Sobic.004G355000 SAC9, putative, expressed -
5 Sobic.006G138400 regulatory subunit, putative, expressed -
6 Sobic.001G292200 dynamin family protein, putative, expressed -
7 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
8 Sobic.002G032700 "Photosystem II 10kDa polypeptide, chloroplastic (Precursor)"(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@PSBR -photosystem II subunit R (At)(PubMedID : 27208977)@photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
9 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
10 Sobic.003G109100 decarboxylase, putative, expressed K01634: SGPL1, sphinganine-1-phosphate aldolase
11 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
12 Sobic.008G009900 lipase-related, putative, expressed -
13 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
14 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
15 Sobic.008G070500 GTP binding protein, putative, expressed -
16 Sobic.005G209100 SCARECROW, putative, expressed -
17 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
18 Sobic.001G048766 - -
19 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
20 Sobic.009G135800 CUE domain containing protein, expressed -


Gene co-expression network
sample Sobic006G003400 Sobic006G003400 Sobic004G052900 Sobic004G052900 Sobic006G003400--Sobic004G052900 Sobic001G248300 Sobic001G248300 Sobic006G003400--Sobic001G248300 Sobic002G340100 Sobic002G340100 Sobic006G003400--Sobic002G340100 Sobic004G355000 Sobic004G355000 Sobic006G003400--Sobic004G355000 Sobic006G138400 Sobic006G138400 Sobic006G003400--Sobic006G138400 Sobic001G292200 Sobic001G292200 Sobic006G003400--Sobic001G292200 Sobic001G178700 Sobic001G178700 Sobic006G003400--Sobic001G178700 Sobic002G032700 Sobic002G032700 Sobic006G003400--Sobic002G032700 Sobic003G407300 Sobic003G407300 Sobic006G003400--Sobic003G407300 Sobic003G109100 Sobic003G109100 Sobic004G052900--Sobic003G109100 Sobic007G024700 Sobic007G024700 Sobic004G052900--Sobic007G024700 Sobic003G100800 Sobic003G100800 Sobic004G052900--Sobic003G100800 Sobic007G172400 Sobic007G172400 Sobic004G052900--Sobic007G172400 Sobic004G052900--Sobic002G340100 Sobic002G419800 Sobic002G419800 Sobic004G052900--Sobic002G419800 Sobic006G245400 Sobic006G245400 Sobic004G052900--Sobic006G245400 Sobic004G052900--Sobic001G248300 Sobic009G094300 Sobic009G094300 Sobic004G052900--Sobic009G094300 Sobic001G248300--Sobic004G355000 Sobic002G169900 Sobic002G169900 Sobic001G248300--Sobic002G169900 Sobic001G248300--Sobic001G178700 Sobic001G248300--Sobic004G052900 Sobic005G001000 Sobic005G001000 Sobic001G248300--Sobic005G001000 Sobic001G248300--Sobic009G094300 Sobic010G112000 Sobic010G112000 Sobic001G248300--Sobic010G112000 Sobic004G329400 Sobic004G329400 Sobic001G248300--Sobic004G329400 Sobic004G113400 Sobic004G113400 Sobic001G248300--Sobic004G113400 Sobic002G340100--Sobic001G292200 Sobic001G071400 Sobic001G071400 Sobic002G340100--Sobic001G071400 Sobic002G340100--Sobic006G245400 Sobic002G315200 Sobic002G315200 Sobic002G340100--Sobic002G315200 Sobic009G135800 Sobic009G135800 Sobic002G340100--Sobic009G135800 Sobic001G114000 Sobic001G114000 Sobic002G340100--Sobic001G114000 Sobic007G217000 Sobic007G217000 Sobic002G340100--Sobic007G217000 Sobic002G340100--Sobic004G052900 Sobic001G474600 Sobic001G474600 Sobic002G340100--Sobic001G474600 Sobic001G207400 Sobic001G207400 Sobic004G355000--Sobic001G207400 Sobic002G430000 Sobic002G430000 Sobic004G355000--Sobic002G430000 Sobic004G355000--Sobic001G248300 Sobic004G355000--Sobic005G001000 Sobic004G355000--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic004G355000--Sobic005G157000 Sobic003G322700 Sobic003G322700 Sobic004G355000--Sobic003G322700 Sobic004G355000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G355000--Sobic009G010600 Sobic006G214500 Sobic006G214500 Sobic006G138400--Sobic006G214500 Sobic003G408500 Sobic003G408500 Sobic006G138400--Sobic003G408500 Sobic009G121100 Sobic009G121100 Sobic006G138400--Sobic009G121100 Sobic002G046800 Sobic002G046800 Sobic006G138400--Sobic002G046800 Sobic006G138400--Sobic003G407300 Sobic010G001500 Sobic010G001500 Sobic006G138400--Sobic010G001500 Sobic008G009900 Sobic008G009900 Sobic006G138400--Sobic008G009900 Sobic006G138400--Sobic007G024700 Sobic003G005800 Sobic003G005800 Sobic006G138400--Sobic003G005800 Sobic001G292200--Sobic002G340100 Sobic002G134200 Sobic002G134200 Sobic001G292200--Sobic002G134200 Sobic003G280800 Sobic003G280800 Sobic001G292200--Sobic003G280800 Sobic002G053000 Sobic002G053000 Sobic001G292200--Sobic002G053000 Sobic005G032800 Sobic005G032800 Sobic001G292200--Sobic005G032800 Sobic008G024600 Sobic008G024600 Sobic001G292200--Sobic008G024600 Sobic003G001100 Sobic003G001100 Sobic001G292200--Sobic003G001100 Sobic001G292200--Sobic001G178700 Sobic001G292200--Sobic001G071400 Sobic001G178700--Sobic004G113400 Sobic001G178700--Sobic009G010600 Sobic001G178700--Sobic001G248300 Sobic001G291000 Sobic001G291000 Sobic001G178700--Sobic001G291000 Sobic001G178700--Sobic001G474600 Sobic001G146800 Sobic001G146800 Sobic001G178700--Sobic001G146800 Sobic001G178700--Sobic010G112000 Sobic001G178700--Sobic007G172400 Sobic001G178700--Sobic004G329400 Sobic002G032700--Sobic006G003400 Sobic002G281500 Sobic002G281500 Sobic002G032700--Sobic002G281500 Sobic009G211000 Sobic009G211000 Sobic002G032700--Sobic009G211000 Sobic002G403500 Sobic002G403500 Sobic002G032700--Sobic002G403500 Sobic001G176600 Sobic001G176600 Sobic002G032700--Sobic001G176600 Sobic002G032700--Sobic001G248300 Sobic005G209100 Sobic005G209100 Sobic002G032700--Sobic005G209100 Sobic002G032700--Sobic002G169900 Sobic001G438600 Sobic001G438600 Sobic002G032700--Sobic001G438600 Sobic003G407300--Sobic009G121100 Sobic001G373200 Sobic001G373200 Sobic003G407300--Sobic001G373200 Sobic003G019100 Sobic003G019100 Sobic003G407300--Sobic003G019100 Sobic003G407300--Sobic006G214500 Sobic001G507300 Sobic001G507300 Sobic003G407300--Sobic001G507300 Sobic004G295800 Sobic004G295800 Sobic003G407300--Sobic004G295800 Sobic009G229800 Sobic009G229800 Sobic003G407300--Sobic009G229800 Sobic002G303000 Sobic002G303000 Sobic003G407300--Sobic002G303000 Sobic003G407300--Sobic007G024700
Octagon: transcription factors


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