Gene annotation
Transcriptome id Sobic.005G209100.1
Synonym Sb05g026260
Functional annotation SCARECROW, putative, expressed
UniProt A0A1Z5RK59
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF59
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37650 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os11g47910.1 : SCARECROW, putative, expressed
MaizeGDB (Corn) Zm00025a015950 , Zm00025a029170 , Zm00025a029171
Brachypodium KQJ87045
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G221000 NBS-LRR disease resistance protein, putative, expressed -
2 Sobic.008G185300 PPR repeat domain containing protein, putative, expressed -
3 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
4 Sobic.001G228800 - -
5 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
6 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
7 Sobic.008G009900 lipase-related, putative, expressed -
8 Sobic.008G101000 powdery mildew resistance protein PM3b, putative, expressed -
9 Sobic.006G003400 expressed protein -
10 Sobic.006G138400 regulatory subunit, putative, expressed -
11 Sobic.002G169633 - -
12 Sobic.005G110300 - -
13 Sobic.005G019600 rp3 protein, putative, expressed -
14 Sobic.002G427050 - -
15 Sobic.001G292200 dynamin family protein, putative, expressed -
16 Sobic.001G490000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLA4 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
17 Sobic.002G032700 "Photosystem II 10kDa polypeptide, chloroplastic (Precursor)"(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@PSBR -photosystem II subunit R (At)(PubMedID : 27208977)@photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
18 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
19 Sobic.001G028900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
20 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein


Gene co-expression network
sample Sobic005G209100 Sobic005G209100 Sobic009G221000 Sobic009G221000 Sobic005G209100--Sobic009G221000 Sobic008G185300 Sobic008G185300 Sobic005G209100--Sobic008G185300 Sobic005G032800 Sobic005G032800 Sobic005G209100--Sobic005G032800 Sobic001G228800 Sobic001G228800 Sobic005G209100--Sobic001G228800 Sobic001G178700 Sobic001G178700 Sobic005G209100--Sobic001G178700 Sobic009G010600 Sobic009G010600 Sobic005G209100--Sobic009G010600 Sobic008G009900 Sobic008G009900 Sobic005G209100--Sobic008G009900 Sobic008G101000 Sobic008G101000 Sobic005G209100--Sobic008G101000 Sobic006G003400 Sobic006G003400 Sobic005G209100--Sobic006G003400 Sobic005G019600 Sobic005G019600 Sobic009G221000--Sobic005G019600 Sobic009G221000--Sobic005G032800 Sobic002G173000 Sobic002G173000 Sobic009G221000--Sobic002G173000 Sobic009G221000--Sobic008G101000 Sobic009G221000--Sobic005G209100 Sobic002G161900 Sobic002G161900 Sobic009G221000--Sobic002G161900 Sobic008G027000 Sobic008G027000 Sobic009G221000--Sobic008G027000 Sobic003G113200 Sobic003G113200 Sobic009G221000--Sobic003G113200 Sobic009G221000--Sobic008G185300 Sobic005G110200 Sobic005G110200 Sobic008G185300--Sobic005G110200 Sobic008G185300--Sobic005G032800 Sobic004G263600 Sobic004G263600 Sobic008G185300--Sobic004G263600 Sobic010G239600 Sobic010G239600 Sobic008G185300--Sobic010G239600 Sobic005G110300 Sobic005G110300 Sobic008G185300--Sobic005G110300 Sobic002G409700 Sobic002G409700 Sobic008G185300--Sobic002G409700 Sobic002G169633 Sobic002G169633 Sobic008G185300--Sobic002G169633 Sobic008G185300--Sobic005G209100 Sobic008G185300--Sobic009G221000 Sobic003G280800 Sobic003G280800 Sobic005G032800--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic005G032800--Sobic001G474600 Sobic005G032800--Sobic002G173000 Sobic006G021250 Sobic006G021250 Sobic005G032800--Sobic006G021250 Sobic002G134200 Sobic002G134200 Sobic005G032800--Sobic002G134200 Sobic005G032800--Sobic002G169633 Sobic001G498600 Sobic001G498600 Sobic005G032800--Sobic001G498600 Sobic010G112000 Sobic010G112000 Sobic005G032800--Sobic010G112000 Sobic001G292200 Sobic001G292200 Sobic005G032800--Sobic001G292200 Sobic001G228800--Sobic005G032800 Sobic001G228800--Sobic005G209100 Sobic001G228800--Sobic003G113200 Sobic005G090401 Sobic005G090401 Sobic001G228800--Sobic005G090401 Sobic001G228800--Sobic005G110200 Sobic001G228800--Sobic009G221000 Sobic001G228800--Sobic008G185300 Sobic001G228800--Sobic003G280800 Sobic002G053000 Sobic002G053000 Sobic001G228800--Sobic002G053000 Sobic004G113400 Sobic004G113400 Sobic001G178700--Sobic004G113400 Sobic001G178700--Sobic009G010600 Sobic001G248300 Sobic001G248300 Sobic001G178700--Sobic001G248300 Sobic001G291000 Sobic001G291000 Sobic001G178700--Sobic001G291000 Sobic001G178700--Sobic001G474600 Sobic001G146800 Sobic001G146800 Sobic001G178700--Sobic001G146800 Sobic001G178700--Sobic010G112000 Sobic007G172400 Sobic007G172400 Sobic001G178700--Sobic007G172400 Sobic004G329400 Sobic004G329400 Sobic001G178700--Sobic004G329400 Sobic009G010600--Sobic004G113400 Sobic009G010600--Sobic001G474600 Sobic009G010600--Sobic001G178700 Sobic001G058700 Sobic001G058700 Sobic009G010600--Sobic001G058700 Sobic001G281100 Sobic001G281100 Sobic009G010600--Sobic001G281100 Sobic004G355000 Sobic004G355000 Sobic009G010600--Sobic004G355000 Sobic009G010600--Sobic004G329400 Sobic002G427050 Sobic002G427050 Sobic009G010600--Sobic002G427050 Sobic005G026200 Sobic005G026200 Sobic009G010600--Sobic005G026200 Sobic008G009900--Sobic001G178700 Sobic010G001500 Sobic010G001500 Sobic008G009900--Sobic010G001500 Sobic006G138400 Sobic006G138400 Sobic008G009900--Sobic006G138400 Sobic003G407300 Sobic003G407300 Sobic008G009900--Sobic003G407300 Sobic004G052900 Sobic004G052900 Sobic008G009900--Sobic004G052900 Sobic008G009900--Sobic004G355000 Sobic009G249200 Sobic009G249200 Sobic008G009900--Sobic009G249200 Sobic007G024700 Sobic007G024700 Sobic008G009900--Sobic007G024700 Sobic008G009900--Sobic005G032800 Sobic008G101000--Sobic009G221000 Sobic008G101000--Sobic008G185300 Sobic001G388250 Sobic001G388250 Sobic008G101000--Sobic001G388250 Sobic005G059200 Sobic005G059200 Sobic008G101000--Sobic005G059200 Sobic008G101000--Sobic005G110200 Sobic008G101000--Sobic005G209100 Sobic010G141800 Sobic010G141800 Sobic008G101000--Sobic010G141800 Sobic005G136900 Sobic005G136900 Sobic008G101000--Sobic005G136900 Sobic008G101000--Sobic002G409700 Sobic006G003400--Sobic004G052900 Sobic006G003400--Sobic001G248300 Sobic002G340100 Sobic002G340100 Sobic006G003400--Sobic002G340100 Sobic006G003400--Sobic004G355000 Sobic006G003400--Sobic006G138400 Sobic006G003400--Sobic001G292200 Sobic006G003400--Sobic001G178700 Sobic002G032700 Sobic002G032700 Sobic006G003400--Sobic002G032700 Sobic006G003400--Sobic003G407300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.