Gene annotation
Transcriptome id Sobic.001G490000.1
Synonym CSLA09, RAT4, ATCSLA9, CSLA9, Sb01g045850, ATCSLA09
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
CSLA4 - cellulose synthase-like family A
mannan synthase, expressed
UniProt C5WWR7
Pfam PF13632
Panther DB PTHR32044 PTHR32044:SF23
NCBI CDD -
KEGG Orthology K13680; beta-mannan synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G03760 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os03g07350.1 : CSLA4 - cellulose synthase-like family A; mannan synthase, expressed
MaizeGDB (Corn) Zm00025a053340 , Zm00025a053341 , Zm00025a006992 , Zm00025a022027
Brachypodium KQJ98402 , KQJ96611
Barley HORVU6Hr1G018840.5 , HORVU6Hr1G018840.4 , HORVU6Hr1G018840.6 , HORVU6Hr1G018840.1 , HORVU6Hr1G018840.3 , HORVU6Hr1G018840.2 , HORVU6Hr1G018840.9 , HORVU6Hr1G018840.8 , HORVU6Hr1G018840.7 , HORVU6Hr1G018840.11 , HORVU6Hr1G018840.13 , HORVU6Hr1G018840.12 , HORVU6Hr1G018840.14
Wheat TraesCS6D02G094300 , TraesCS6B02G135100 , TraesCS6A02G105800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
2 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
3 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
4 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
5 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
6 Sobic.001G151500 choline transporter-related, putative, expressed -
7 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
8 Sobic.006G114000 transmembrane anterior posterior transformation 1, putative, expressed -
9 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
10 Sobic.001G028900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
11 Sobic.002G188500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
12 Sobic.006G149700 DUF584 domain containing protein, putative, expressed -
13 Sobic.008G024600 expressed protein -
14 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
15 Sobic.009G119200 "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
16 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
17 Sobic.002G343800 - -
18 Sobic.005G209100 SCARECROW, putative, expressed -
19 Sobic.003G093300 - -
20 Sobic.009G121100 expressed protein -


Gene co-expression network
sample Sobic001G490000 Sobic001G490000 Sobic004G037900 Sobic004G037900 Sobic001G490000--Sobic004G037900 Sobic010G001600 Sobic010G001600 Sobic001G490000--Sobic010G001600 Sobic003G005800 Sobic003G005800 Sobic001G490000--Sobic003G005800 Sobic008G160700 Sobic008G160700 Sobic001G490000--Sobic008G160700 Sobic001G373100 Sobic001G373100 Sobic001G490000--Sobic001G373100 Sobic001G151500 Sobic001G151500 Sobic001G490000--Sobic001G151500 Sobic003G145900 Sobic003G145900 Sobic001G490000--Sobic003G145900 Sobic006G114000 Sobic006G114000 Sobic001G490000--Sobic006G114000 Sobic009G235900 Sobic009G235900 Sobic001G490000--Sobic009G235900 Sobic004G037900--Sobic001G151500 Sobic002G188500 Sobic002G188500 Sobic004G037900--Sobic002G188500 Sobic004G037900--Sobic008G160700 Sobic004G037900--Sobic001G490000 Sobic004G037900--Sobic010G001600 Sobic004G037900--Sobic003G005800 Sobic009G119200 Sobic009G119200 Sobic004G037900--Sobic009G119200 Sobic004G037900--Sobic003G145900 Sobic004G037900--Sobic009G235900 Sobic010G001600--Sobic008G160700 Sobic006G124900 Sobic006G124900 Sobic010G001600--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic003G005800--Sobic002G188500 Sobic001G443900 Sobic001G443900 Sobic003G005800--Sobic001G443900 Sobic003G005800--Sobic009G235900 Sobic003G005800--Sobic008G160700 Sobic003G005800--Sobic004G037900 Sobic006G138400 Sobic006G138400 Sobic003G005800--Sobic006G138400 Sobic003G005800--Sobic001G194900 Sobic009G121100 Sobic009G121100 Sobic003G005800--Sobic009G121100 Sobic006G214500 Sobic006G214500 Sobic003G005800--Sobic006G214500 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000 Sobic001G373100--Sobic008G160700 Sobic001G373100--Sobic009G119200 Sobic001G373100--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic001G373100--Sobic001G156100 Sobic006G149700 Sobic006G149700 Sobic001G373100--Sobic006G149700 Sobic001G373100--Sobic009G027000 Sobic001G373100--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic001G373100--Sobic001G359400 Sobic002G113300 Sobic002G113300 Sobic001G373100--Sobic002G113300 Sobic001G151500--Sobic004G037900 Sobic001G151500--Sobic001G490000 Sobic001G151500--Sobic010G001600 Sobic001G151500--Sobic008G160700 Sobic010G173800 Sobic010G173800 Sobic001G151500--Sobic010G173800 Sobic001G151500--Sobic009G119200 Sobic001G151500--Sobic002G188500 Sobic001G151500--Sobic003G005800 Sobic001G151500--Sobic003G145900 Sobic003G145900--Sobic009G235900 Sobic003G145900--Sobic008G160700 Sobic005G007800 Sobic005G007800 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic003G145900--Sobic004G037900 Sobic005G061601 Sobic005G061601 Sobic006G114000--Sobic005G061601 Sobic008G026100 Sobic008G026100 Sobic006G114000--Sobic008G026100 Sobic006G240000 Sobic006G240000 Sobic006G114000--Sobic006G240000 Sobic004G092300 Sobic004G092300 Sobic006G114000--Sobic004G092300 Sobic003G216100 Sobic003G216100 Sobic006G114000--Sobic003G216100 Sobic007G168800 Sobic007G168800 Sobic006G114000--Sobic007G168800 Sobic005G110427 Sobic005G110427 Sobic006G114000--Sobic005G110427 Sobic005G067900 Sobic005G067900 Sobic006G114000--Sobic005G067900 Sobic005G154850 Sobic005G154850 Sobic006G114000--Sobic005G154850 Sobic009G235900--Sobic001G194900 Sobic009G235900--Sobic002G188500 Sobic009G235900--Sobic008G160700 Sobic009G235900--Sobic001G359400 Sobic009G235900--Sobic005G007800 Sobic009G235900--Sobic010G042900 Sobic009G235900--Sobic003G005800 Sobic009G235900--Sobic003G145900 Sobic001G347600 Sobic001G347600 Sobic009G235900--Sobic001G347600
Octagon: transcription factors


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