Gene annotation
Transcriptome id Sobic.001G151500.1
Synonym Sb01g013160
Functional annotation choline transporter-related, putative, expressed
UniProt C5WR28
Pfam PF04515
Panther DB PTHR12385 PTHR12385:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04440 : Plasma-membrane choline transporter family protein
RAP-DB (Rice) LOC_Os03g44840.1 : choline transporter-related, putative, expressed
MaizeGDB (Corn) Zm00025a007581
Brachypodium KQK13933 , KQK13932 , PNT74373
Barley HORVU5Hr1G092200.10 , HORVU5Hr1G092200.11 , HORVU5Hr1G092200.12 , HORVU5Hr1G092200.13 , HORVU5Hr1G092200.14 , HORVU5Hr1G092200.15 , HORVU5Hr1G092200.16 , HORVU5Hr1G092200.9 , HORVU5Hr1G092200.2 , HORVU5Hr1G092200.3 , HORVU5Hr1G092200.6 , HORVU5Hr1G092200.7 , HORVU5Hr1G092200.4 , HORVU5Hr1G092200.5 , HORVU5Hr1G092200.8
Wheat TraesCS5D02G379800 , TraesCS5B02G372600 , TraesCS5A02G370300 , TraesCS5A02G370300 , TraesCS5A02G370300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
2 Sobic.001G490000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLA4 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
3 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
4 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
5 Sobic.010G173800 beta-galactosidase precursor, putative, expressed -
6 Sobic.009G119200 "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
7 Sobic.002G188500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
8 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
9 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
10 Sobic.004G357200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.008G024600 expressed protein -
12 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
13 Sobic.001G017600 protein of unknown function containing protein, expressed -
14 Sobic.009G062900 structural constituent of ribosome, putative, expressed -
15 Sobic.009G083900 C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
16 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
17 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
18 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
19 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
20 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase


Gene co-expression network
sample Sobic001G151500 Sobic001G151500 Sobic004G037900 Sobic004G037900 Sobic001G151500--Sobic004G037900 Sobic001G490000 Sobic001G490000 Sobic001G151500--Sobic001G490000 Sobic010G001600 Sobic010G001600 Sobic001G151500--Sobic010G001600 Sobic008G160700 Sobic008G160700 Sobic001G151500--Sobic008G160700 Sobic010G173800 Sobic010G173800 Sobic001G151500--Sobic010G173800 Sobic009G119200 Sobic009G119200 Sobic001G151500--Sobic009G119200 Sobic002G188500 Sobic002G188500 Sobic001G151500--Sobic002G188500 Sobic003G005800 Sobic003G005800 Sobic001G151500--Sobic003G005800 Sobic003G145900 Sobic003G145900 Sobic001G151500--Sobic003G145900 Sobic004G037900--Sobic001G151500 Sobic004G037900--Sobic002G188500 Sobic004G037900--Sobic008G160700 Sobic004G037900--Sobic001G490000 Sobic004G037900--Sobic010G001600 Sobic004G037900--Sobic003G005800 Sobic004G037900--Sobic009G119200 Sobic004G037900--Sobic003G145900 Sobic009G235900 Sobic009G235900 Sobic004G037900--Sobic009G235900 Sobic001G490000--Sobic004G037900 Sobic001G490000--Sobic010G001600 Sobic001G490000--Sobic003G005800 Sobic001G490000--Sobic008G160700 Sobic001G373100 Sobic001G373100 Sobic001G490000--Sobic001G373100 Sobic001G490000--Sobic001G151500 Sobic001G490000--Sobic003G145900 Sobic006G114000 Sobic006G114000 Sobic001G490000--Sobic006G114000 Sobic001G490000--Sobic009G235900 Sobic010G001600--Sobic008G160700 Sobic006G124900 Sobic006G124900 Sobic010G001600--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000 Sobic002G090400 Sobic002G090400 Sobic010G173800--Sobic002G090400 Sobic004G143700 Sobic004G143700 Sobic010G173800--Sobic004G143700 Sobic010G173800--Sobic001G194900 Sobic010G173800--Sobic007G130600 Sobic010G173800--Sobic008G160700 Sobic007G099500 Sobic007G099500 Sobic010G173800--Sobic007G099500 Sobic010G173800--Sobic005G130200 Sobic005G187200 Sobic005G187200 Sobic010G173800--Sobic005G187200 Sobic005G181000 Sobic005G181000 Sobic010G173800--Sobic005G181000 Sobic009G119200--Sobic001G373100 Sobic009G119200--Sobic004G037900 Sobic009G119200--Sobic008G160700 Sobic006G149700 Sobic006G149700 Sobic009G119200--Sobic006G149700 Sobic009G119200--Sobic010G001600 Sobic009G119200--Sobic001G490000 Sobic004G153501 Sobic004G153501 Sobic009G119200--Sobic004G153501 Sobic009G119200--Sobic001G151500 Sobic004G153400 Sobic004G153400 Sobic009G119200--Sobic004G153400 Sobic002G188500--Sobic009G235900 Sobic002G188500--Sobic003G005800 Sobic002G188500--Sobic004G037900 Sobic001G498200 Sobic001G498200 Sobic002G188500--Sobic001G498200 Sobic002G188500--Sobic001G194900 Sobic006G138400 Sobic006G138400 Sobic002G188500--Sobic006G138400 Sobic002G188500--Sobic003G145900 Sobic002G188500--Sobic008G160700 Sobic002G188500--Sobic001G490000 Sobic003G005800--Sobic002G188500 Sobic001G443900 Sobic001G443900 Sobic003G005800--Sobic001G443900 Sobic003G005800--Sobic009G235900 Sobic003G005800--Sobic008G160700 Sobic003G005800--Sobic004G037900 Sobic003G005800--Sobic006G138400 Sobic003G005800--Sobic001G194900 Sobic009G121100 Sobic009G121100 Sobic003G005800--Sobic009G121100 Sobic003G005800--Sobic006G214500 Sobic003G145900--Sobic009G235900 Sobic003G145900--Sobic008G160700 Sobic005G007800 Sobic005G007800 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic003G145900--Sobic004G037900
Octagon: transcription factors


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