Gene annotation
Transcriptome id Sobic.010G173800.1,Sobic.010G173800.2,Sobic.010G173800.3
Synonym Sb10g022620, BGAL1
Functional annotation beta-galactosidase precursor, putative, expressed
UniProt A0A1W0VTL1 , C5Z534 , A0A1W0VTL7
Pfam PF01301
Panther DB PTHR23421 PTHR23421:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT3G13750 : beta galactosidase 1
RAP-DB (Rice) LOC_Os06g37560.1 : beta-galactosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a028492 , Zm00025a051144 , Zm00025a034561
Brachypodium KQJ94047 , KQJ94046 , KQK08433 , KQK17896
Barley HORVU2Hr1G057440.1 , HORVU2Hr1G057440.2 , HORVU2Hr1G057440.3 , HORVU2Hr1G057440.4 , HORVU6Hr1G039490.19 , HORVU6Hr1G039490.18 , HORVU6Hr1G039490.17 , HORVU6Hr1G039490.16 , HORVU6Hr1G039490.14 , HORVU6Hr1G039490.13 , HORVU6Hr1G039490.11 , HORVU6Hr1G039490.10 , HORVU7Hr1G086690.6 , HORVU7Hr1G086690.7 , HORVU7Hr1G086690.4 , HORVU7Hr1G086690.5 , HORVU7Hr1G086690.2 , HORVU7Hr1G086690.3 , HORVU4Hr1G074280.9 , HORVU4Hr1G074280.8 , HORVU1Hr1G003200.4 , HORVU4Hr1G074280.6 , HORVU4Hr1G074280.4 , HORVU4Hr1G074280.3 , HORVU1Hr1G003200.1 , HORVU1Hr1G003200.2 , HORVU1Hr1G003200.3 , HORVU6Hr1G039490.20 , HORVU6Hr1G039490.7 , HORVU6Hr1G039490.6 , HORVU6Hr1G039490.5 , HORVU6Hr1G039490.4 , HORVU6Hr1G039490.3 , HORVU6Hr1G039490.2 , HORVU6Hr1G039490.1 , HORVU6Hr1G039490.9 , HORVU6Hr1G039490.8 , HORVU3Hr1G050450.15 , HORVU3Hr1G050450.14 , HORVU3Hr1G050450.13 , HORVU3Hr1G050450.12 , HORVU3Hr1G050450.11 , HORVU3Hr1G050450.10 , HORVU3Hr1G050450.9 , HORVU3Hr1G050450.8 , HORVU3Hr1G050450.7 , HORVU3Hr1G050450.6 , HORVU3Hr1G050450.5 , HORVU3Hr1G050450.4 , HORVU3Hr1G050450.3 , HORVU3Hr1G050450.2 , HORVU3Hr1G050450.1 , HORVU1Hr1G003210.3 , HORVU1Hr1G003210.2 , HORVU7Hr1G086690.14 , HORVU7Hr1G086690.15 , HORVU7Hr1G086690.16 , HORVU7Hr1G086690.10 , HORVU7Hr1G086690.11 , HORVU7Hr1G086690.12 , HORVU7Hr1G086690.13 , HORVU4Hr1G074280.13 , HORVU4Hr1G074280.11 , HORVU4Hr1G074280.2 , HORVU7Hr1G086690.8 , HORVU7Hr1G086690.9 , HORVU1Hr1G003210.1
Wheat TraesCS3A02G208600 , TraesCS4D02G279400 , TraesCS4D02G279400 , TraesCS7B02G264200 , TraesCS3B02G235100 , TraesCS3B02G235100 , TraesCS6A02G185400 , TraesCS4D02G279400 , TraesCS6B02G214100 , TraesCS6B02G214100 , TraesCS6D02G172400 , TraesCS3D02G211500 , TraesCS3D02G211500 , TraesCS7D02G359500 , TraesCS7A02G363600
Populus -


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cDNA sequences
Sobic.010G173800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G090400 polygalacturonase, putative, expressed -
2 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
3 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
4 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
5 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
6 Sobic.007G099500 hypothetical protein -
7 Sobic.005G130200 - -
8 Sobic.005G187200 expressed protein -
9 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
10 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
11 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
12 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
13 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
14 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
15 Sobic.004G212800 - -
16 Sobic.001G192900 DNA excision repair protein ERCC-1, putative, expressed K10849: DNA excision repair protein ERCC-1
17 Sobic.001G347600 paramyosin, putative, expressed -
18 Sobic.010G248200 KID-containing protein, putative, expressed -
19 Sobic.004G169501 - -
20 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -


Gene co-expression network
sample Sobic010G173800 Sobic010G173800 Sobic002G090400 Sobic002G090400 Sobic010G173800--Sobic002G090400 Sobic004G143700 Sobic004G143700 Sobic010G173800--Sobic004G143700 Sobic001G194900 Sobic001G194900 Sobic010G173800--Sobic001G194900 Sobic007G130600 Sobic007G130600 Sobic010G173800--Sobic007G130600 Sobic008G160700 Sobic008G160700 Sobic010G173800--Sobic008G160700 Sobic007G099500 Sobic007G099500 Sobic010G173800--Sobic007G099500 Sobic005G130200 Sobic005G130200 Sobic010G173800--Sobic005G130200 Sobic005G187200 Sobic005G187200 Sobic010G173800--Sobic005G187200 Sobic005G181000 Sobic005G181000 Sobic010G173800--Sobic005G181000 Sobic002G090400--Sobic007G099500 Sobic002G049000 Sobic002G049000 Sobic002G090400--Sobic002G049000 Sobic008G068800 Sobic008G068800 Sobic002G090400--Sobic008G068800 Sobic004G169501 Sobic004G169501 Sobic002G090400--Sobic004G169501 Sobic002G090400--Sobic004G143700 Sobic009G059600 Sobic009G059600 Sobic002G090400--Sobic009G059600 Sobic003G424100 Sobic003G424100 Sobic002G090400--Sobic003G424100 Sobic007G073400 Sobic007G073400 Sobic002G090400--Sobic007G073400 Sobic006G145000 Sobic006G145000 Sobic002G090400--Sobic006G145000 Sobic004G143700--Sobic007G073400 Sobic007G023700 Sobic007G023700 Sobic004G143700--Sobic007G023700 Sobic004G212800 Sobic004G212800 Sobic004G143700--Sobic004G212800 Sobic002G283300 Sobic002G283300 Sobic004G143700--Sobic002G283300 Sobic010G248200 Sobic010G248200 Sobic004G143700--Sobic010G248200 Sobic001G024200 Sobic001G024200 Sobic004G143700--Sobic001G024200 Sobic003G093600 Sobic003G093600 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic001G194900--Sobic008G160700 Sobic010G001600 Sobic010G001600 Sobic001G194900--Sobic010G001600 Sobic001G194900--Sobic007G130600 Sobic001G194900--Sobic005G187200 Sobic001G543800 Sobic001G543800 Sobic001G194900--Sobic001G543800 Sobic009G235900 Sobic009G235900 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic005G177800 Sobic005G177800 Sobic001G194900--Sobic005G177800 Sobic001G194900--Sobic005G130200 Sobic007G130600--Sobic001G194900 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic006G124900 Sobic006G124900 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic009G027000 Sobic009G027000 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic008G160700--Sobic009G027000 Sobic007G099500--Sobic009G059600 Sobic004G164600 Sobic004G164600 Sobic007G099500--Sobic004G164600 Sobic007G099500--Sobic002G090400 Sobic007G099500--Sobic007G073400 Sobic007G099500--Sobic003G424100 Sobic004G240900 Sobic004G240900 Sobic007G099500--Sobic004G240900 Sobic008G031350 Sobic008G031350 Sobic007G099500--Sobic008G031350 Sobic007G099500--Sobic004G212800 Sobic002G221700 Sobic002G221700 Sobic007G099500--Sobic002G221700 Sobic005G130200--Sobic010G248200 Sobic001G479500 Sobic001G479500 Sobic005G130200--Sobic001G479500 Sobic005G130200--Sobic001G543900 Sobic008G161401 Sobic008G161401 Sobic005G130200--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic005G130200--Sobic009G156000 Sobic005G130200--Sobic002G283300 Sobic005G130200--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic005G130200--Sobic003G057800 Sobic001G477800 Sobic001G477800 Sobic005G130200--Sobic001G477800 Sobic010G263800 Sobic010G263800 Sobic005G187200--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic005G187200--Sobic004G271900 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic005G187200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic005G187200--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic005G187200--Sobic002G077200 Sobic009G134500 Sobic009G134500 Sobic005G187200--Sobic009G134500 Sobic005G187200--Sobic001G194900 Sobic005G181000--Sobic007G130600 Sobic005G181000--Sobic009G027000 Sobic006G122400 Sobic006G122400 Sobic005G181000--Sobic006G122400 Sobic005G181000--Sobic006G124900 Sobic005G181000--Sobic001G439500 Sobic002G253500 Sobic002G253500 Sobic005G181000--Sobic002G253500 Sobic007G185900 Sobic007G185900 Sobic005G181000--Sobic007G185900 Sobic002G313300 Sobic002G313300 Sobic005G181000--Sobic002G313300 Sobic002G039500 Sobic002G039500 Sobic005G181000--Sobic002G039500
Octagon: transcription factors


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