Gene annotation
Transcriptome id Sobic.001G192900.1
Synonym UVR7, ERCC1, Sb01g016980
Functional annotation DNA excision repair protein ERCC-1, putative, expressed
UniProt C5WVC6
Pfam PF12826 PF03834
Panther DB PTHR12749 PTHR12749:SF0
NCBI CDD KOG2841; Structure-specific endonuclease ERCC1-XPF, ERCC1 component
KEGG Orthology K10849; DNA excision repair protein ERCC-1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05210 : nucleotide repair protein, putative
RAP-DB (Rice) LOC_Os10g37490.1 : DNA excision repair protein ERCC-1, putative, expressed
MaizeGDB (Corn) Zm00025a006283
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
2 Sobic.004G212800 - -
3 Sobic.009G231300 drought induced 19 protein, putative, expressed -
4 Sobic.008G009500 pentatricopeptide, putative, expressed -
5 Sobic.010G248200 KID-containing protein, putative, expressed -
6 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
7 Sobic.005G130200 - -
8 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
9 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
10 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
11 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
12 Sobic.004G082500 OsFBA1 - F-box and FBA domain containing protein, expressed -
13 Sobic.008G042250 - -
14 Sobic.002G007250 - -
15 Sobic.007G023700 MA3 domain containing protein, expressed -
16 Sobic.004G164600 - -
17 Sobic.001G345333 - -
18 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
19 Sobic.008G079100 - -
20 Sobic.002G108800 auxin efflux carrier component, putative, expressed -


Gene co-expression network
sample Sobic001G192900 Sobic001G192900 Sobic007G073400 Sobic007G073400 Sobic001G192900--Sobic007G073400 Sobic004G212800 Sobic004G212800 Sobic001G192900--Sobic004G212800 Sobic009G231300 Sobic009G231300 Sobic001G192900--Sobic009G231300 Sobic008G009500 Sobic008G009500 Sobic001G192900--Sobic008G009500 Sobic010G248200 Sobic010G248200 Sobic001G192900--Sobic010G248200 Sobic001G543900 Sobic001G543900 Sobic001G192900--Sobic001G543900 Sobic005G130200 Sobic005G130200 Sobic001G192900--Sobic005G130200 Sobic004G076732 Sobic004G076732 Sobic001G192900--Sobic004G076732 Sobic004G143700 Sobic004G143700 Sobic001G192900--Sobic004G143700 Sobic007G073400--Sobic004G212800 Sobic004G164600 Sobic004G164600 Sobic007G073400--Sobic004G164600 Sobic007G073400--Sobic004G076732 Sobic007G073400--Sobic008G009500 Sobic009G113600 Sobic009G113600 Sobic007G073400--Sobic009G113600 Sobic008G031350 Sobic008G031350 Sobic007G073400--Sobic008G031350 Sobic008G042250 Sobic008G042250 Sobic007G073400--Sobic008G042250 Sobic005G110430 Sobic005G110430 Sobic007G073400--Sobic005G110430 Sobic007G073400--Sobic004G143700 Sobic004G212800--Sobic007G073400 Sobic004G212800--Sobic004G164600 Sobic001G024200 Sobic001G024200 Sobic004G212800--Sobic001G024200 Sobic001G345333 Sobic001G345333 Sobic004G212800--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G212800--Sobic004G076732 Sobic008G161401 Sobic008G161401 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500 Sobic005G130100 Sobic005G130100 Sobic009G231300--Sobic005G130100 Sobic009G180200 Sobic009G180200 Sobic009G231300--Sobic009G180200 Sobic009G109450 Sobic009G109450 Sobic009G231300--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G231300--Sobic009G078500 Sobic007G156500 Sobic007G156500 Sobic009G231300--Sobic007G156500 Sobic005G003200 Sobic005G003200 Sobic009G231300--Sobic005G003200 Sobic003G258400 Sobic003G258400 Sobic009G231300--Sobic003G258400 Sobic004G199600 Sobic004G199600 Sobic009G231300--Sobic004G199600 Sobic010G050600 Sobic010G050600 Sobic009G231300--Sobic010G050600 SobicK024000 SobicK024000 Sobic008G009500--SobicK024000 Sobic008G009500--Sobic004G076732 Sobic002G062300 Sobic002G062300 Sobic008G009500--Sobic002G062300 Sobic008G009500--Sobic009G113600 Sobic001G253100 Sobic001G253100 Sobic008G009500--Sobic001G253100 Sobic008G009500--Sobic007G073400 Sobic009G209800 Sobic009G209800 Sobic008G009500--Sobic009G209800 Sobic008G009500--Sobic008G031350 Sobic005G221425 Sobic005G221425 Sobic008G009500--Sobic005G221425 Sobic010G248200--Sobic002G007250 Sobic010G248200--Sobic001G345333 Sobic010G248200--Sobic004G212800 Sobic010G248200--Sobic005G130200 Sobic002G253500 Sobic002G253500 Sobic010G248200--Sobic002G253500 Sobic010G248200--Sobic008G161401 Sobic002G108800 Sobic002G108800 Sobic010G248200--Sobic002G108800 Sobic001G243901 Sobic001G243901 Sobic010G248200--Sobic001G243901 Sobic010G218500 Sobic010G218500 Sobic010G248200--Sobic010G218500 Sobic001G477800 Sobic001G477800 Sobic001G543900--Sobic001G477800 Sobic002G313300 Sobic002G313300 Sobic001G543900--Sobic002G313300 Sobic001G543900--Sobic004G112500 Sobic002G001600 Sobic002G001600 Sobic001G543900--Sobic002G001600 Sobic006G009400 Sobic006G009400 Sobic001G543900--Sobic006G009400 Sobic002G166700 Sobic002G166700 Sobic001G543900--Sobic002G166700 Sobic001G543900--Sobic005G130200 Sobic001G272000 Sobic001G272000 Sobic001G543900--Sobic001G272000 Sobic001G543900--Sobic010G248200 Sobic005G130200--Sobic010G248200 Sobic001G479500 Sobic001G479500 Sobic005G130200--Sobic001G479500 Sobic005G130200--Sobic001G543900 Sobic005G130200--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic005G130200--Sobic009G156000 Sobic002G283300 Sobic002G283300 Sobic005G130200--Sobic002G283300 Sobic005G130200--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic005G130200--Sobic003G057800 Sobic005G130200--Sobic001G477800 SobicK009900 SobicK009900 Sobic004G076732--SobicK009900 Sobic002G410200 Sobic002G410200 Sobic004G076732--Sobic002G410200 Sobic004G076732--Sobic001G253100 Sobic004G076732--Sobic008G009500 Sobic004G076732--Sobic007G073400 Sobic004G076732--Sobic009G209800 Sobic004G076732--Sobic008G042250 Sobic004G076732--Sobic005G110430 Sobic004G076732--Sobic004G212800 Sobic004G143700--Sobic007G073400 Sobic007G023700 Sobic007G023700 Sobic004G143700--Sobic007G023700 Sobic004G143700--Sobic004G212800 Sobic004G143700--Sobic002G283300 Sobic004G143700--Sobic010G248200 Sobic004G143700--Sobic001G024200 Sobic003G093600 Sobic003G093600 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic004G143700--Sobic001G543900
Octagon: transcription factors


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