Gene annotation
Transcriptome id Sobic.004G082500.1
Synonym Sb04g006790
Functional annotation OsFBA1 - F-box and FBA domain containing protein, expressed
UniProt C5XXJ5
Pfam PF00646
Panther DB PTHR31790 PTHR31790:SF27
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G49610 : F-box family protein
RAP-DB (Rice) LOC_Os02g10600.1 : OsFBA1 - F-box and FBA domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034640
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G082500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G313300 bromodomain domain containing protein, expressed -
2 Sobic.006G124900 MA3 domain containing protein, expressed -
3 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.001G192900 DNA excision repair protein ERCC-1, putative, expressed K10849: DNA excision repair protein ERCC-1
5 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.005G130200 - -
7 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
8 Sobic.004G196700 expressed protein -
9 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
10 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
11 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
12 Sobic.007G037100 MYB family transcription factor, putative, expressed -
13 Sobic.001G477800 expressed protein -
14 Sobic.010G248200 KID-containing protein, putative, expressed -
15 Sobic.001G222300 cyclin-dependent kinase inhibitor, putative, expressed -
16 Sobic.004G112500 - -
17 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
18 Sobic.003G041000 holocarboxylase synthetase, putative, expressed -
19 Sobic.010G278500 expressed protein -
20 Sobic.008G161401 - -


Gene co-expression network
sample Sobic004G082500 Sobic004G082500 Sobic002G313300 Sobic002G313300 Sobic004G082500--Sobic002G313300 Sobic006G124900 Sobic006G124900 Sobic004G082500--Sobic006G124900 Sobic005G177800 Sobic005G177800 Sobic004G082500--Sobic005G177800 Sobic001G192900 Sobic001G192900 Sobic004G082500--Sobic001G192900 Sobic002G001600 Sobic002G001600 Sobic004G082500--Sobic002G001600 Sobic005G130200 Sobic005G130200 Sobic004G082500--Sobic005G130200 Sobic001G543900 Sobic001G543900 Sobic004G082500--Sobic001G543900 Sobic004G196700 Sobic004G196700 Sobic004G082500--Sobic004G196700 Sobic007G078000 Sobic007G078000 Sobic004G082500--Sobic007G078000 Sobic001G477800 Sobic001G477800 Sobic002G313300--Sobic001G477800 Sobic002G077200 Sobic002G077200 Sobic002G313300--Sobic002G077200 Sobic007G011400 Sobic007G011400 Sobic002G313300--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic002G313300--Sobic010G263800 Sobic002G313300--Sobic001G543900 Sobic006G080300 Sobic006G080300 Sobic002G313300--Sobic006G080300 Sobic006G009400 Sobic006G009400 Sobic002G313300--Sobic006G009400 Sobic007G185900 Sobic007G185900 Sobic002G313300--Sobic007G185900 Sobic004G031700 Sobic004G031700 Sobic002G313300--Sobic004G031700 Sobic006G124900--Sobic005G177800 Sobic010G001600 Sobic010G001600 Sobic006G124900--Sobic010G001600 Sobic006G124900--Sobic004G196700 Sobic001G543800 Sobic001G543800 Sobic006G124900--Sobic001G543800 Sobic010G276800 Sobic010G276800 Sobic006G124900--Sobic010G276800 Sobic006G124900--Sobic002G313300 Sobic006G124900--Sobic001G477800 Sobic007G130600 Sobic007G130600 Sobic006G124900--Sobic007G130600 Sobic002G300400 Sobic002G300400 Sobic006G124900--Sobic002G300400 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic005G177800--Sobic004G031700 Sobic005G177800--Sobic001G477800 Sobic005G177800--Sobic007G078000 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic007G073400 Sobic007G073400 Sobic001G192900--Sobic007G073400 Sobic004G212800 Sobic004G212800 Sobic001G192900--Sobic004G212800 Sobic009G231300 Sobic009G231300 Sobic001G192900--Sobic009G231300 Sobic008G009500 Sobic008G009500 Sobic001G192900--Sobic008G009500 Sobic010G248200 Sobic010G248200 Sobic001G192900--Sobic010G248200 Sobic001G192900--Sobic001G543900 Sobic001G192900--Sobic005G130200 Sobic004G076732 Sobic004G076732 Sobic001G192900--Sobic004G076732 Sobic004G143700 Sobic004G143700 Sobic001G192900--Sobic004G143700 Sobic008G116500 Sobic008G116500 Sobic002G001600--Sobic008G116500 Sobic002G001600--Sobic001G543900 Sobic002G001600--Sobic002G313300 Sobic008G101800 Sobic008G101800 Sobic002G001600--Sobic008G101800 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic007G037100 Sobic007G037100 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic005G130200--Sobic010G248200 Sobic001G479500 Sobic001G479500 Sobic005G130200--Sobic001G479500 Sobic005G130200--Sobic001G543900 Sobic008G161401 Sobic008G161401 Sobic005G130200--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic005G130200--Sobic009G156000 Sobic002G283300 Sobic002G283300 Sobic005G130200--Sobic002G283300 Sobic005G130200--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic005G130200--Sobic003G057800 Sobic005G130200--Sobic001G477800 Sobic001G543900--Sobic001G477800 Sobic001G543900--Sobic002G313300 Sobic004G112500 Sobic004G112500 Sobic001G543900--Sobic004G112500 Sobic001G543900--Sobic002G001600 Sobic001G543900--Sobic006G009400 Sobic001G543900--Sobic002G166700 Sobic001G543900--Sobic005G130200 Sobic001G272000 Sobic001G272000 Sobic001G543900--Sobic001G272000 Sobic001G543900--Sobic010G248200 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic010G260500 Sobic010G260500 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic007G078000--Sobic006G082600
Octagon: transcription factors


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