Gene annotation
Transcriptome id Sobic.003G041000.2,Sobic.003G041000.3
Synonym
Functional annotation holocarboxylase synthetase, putative, expressed
UniProt A0A1B6Q161
Pfam -
Panther DB PTHR33675 PTHR33675:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64780 : Uncharacterised conserved protein UCP009193
RAP-DB (Rice) LOC_Os01g08690.1 : holocarboxylase synthetase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G041000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G196700 expressed protein -
2 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
3 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
4 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
5 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
7 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
8 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
9 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
10 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
11 Sobic.006G124900 MA3 domain containing protein, expressed -
12 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
13 Sobic.004G082500 OsFBA1 - F-box and FBA domain containing protein, expressed -
14 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.002G166700 cyclin, putative, expressed -
16 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
17 Sobic.001G206100 expressed protein -
18 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
19 Sobic.003G073000 IWS1 C-terminus family protein, putative, expressed K17498: SPN1, transcription factor SPN1
20 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin


Gene co-expression network
sample Sobic003G041000 Sobic003G041000 Sobic004G196700 Sobic004G196700 Sobic003G041000--Sobic004G196700 Sobic007G185900 Sobic007G185900 Sobic003G041000--Sobic007G185900 Sobic007G078000 Sobic007G078000 Sobic003G041000--Sobic007G078000 Sobic003G397800 Sobic003G397800 Sobic003G041000--Sobic003G397800 Sobic002G001600 Sobic002G001600 Sobic003G041000--Sobic002G001600 Sobic007G137900 Sobic007G137900 Sobic003G041000--Sobic007G137900 Sobic010G260500 Sobic010G260500 Sobic003G041000--Sobic010G260500 Sobic003G333600 Sobic003G333600 Sobic003G041000--Sobic003G333600 Sobic001G451000 Sobic001G451000 Sobic003G041000--Sobic001G451000 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic001G477800 Sobic001G477800 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic007G185900--Sobic004G196700 Sobic007G185900--Sobic002G157300 Sobic007G185900--Sobic007G078000 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic007G185900--Sobic003G397800 Sobic007G185900--Sobic005G149500 Sobic007G185900--Sobic003G187400 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic007G078000--Sobic001G451000 Sobic007G078000--Sobic006G082600 Sobic002G297200 Sobic002G297200 Sobic003G397800--Sobic002G297200 Sobic001G409600 Sobic001G409600 Sobic003G397800--Sobic001G409600 Sobic002G353600 Sobic002G353600 Sobic003G397800--Sobic002G353600 Sobic007G167500 Sobic007G167500 Sobic003G397800--Sobic007G167500 Sobic003G445400 Sobic003G445400 Sobic003G397800--Sobic003G445400 Sobic001G206100 Sobic001G206100 Sobic003G397800--Sobic001G206100 Sobic003G397800--Sobic007G185900 Sobic010G101800 Sobic010G101800 Sobic003G397800--Sobic010G101800 Sobic003G397800--Sobic008G054500 Sobic008G116500 Sobic008G116500 Sobic002G001600--Sobic008G116500 Sobic001G543900 Sobic001G543900 Sobic002G001600--Sobic001G543900 Sobic002G001600--Sobic002G313300 Sobic008G101800 Sobic008G101800 Sobic002G001600--Sobic008G101800 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic007G037100 Sobic007G037100 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic001G251700 Sobic001G251700 Sobic007G137900--Sobic001G251700 Sobic007G137900--Sobic002G157300 Sobic007G137900--Sobic004G196700 Sobic003G200200 Sobic003G200200 Sobic007G137900--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic007G137900--Sobic003G170100 Sobic004G349900 Sobic004G349900 Sobic007G137900--Sobic004G349900 Sobic007G137900--Sobic005G149500 Sobic007G011400 Sobic007G011400 Sobic007G137900--Sobic007G011400 Sobic002G157000 Sobic002G157000 Sobic007G137900--Sobic002G157000 Sobic010G260500--Sobic002G157300 Sobic008G174300 Sobic008G174300 Sobic010G260500--Sobic008G174300 Sobic010G260500--Sobic007G078000 Sobic010G260500--Sobic007G185900 Sobic010G033400 Sobic010G033400 Sobic010G260500--Sobic010G033400 Sobic010G260500--Sobic001G451000 Sobic004G263900 Sobic004G263900 Sobic010G260500--Sobic004G263900 Sobic010G260500--Sobic005G149500 Sobic010G260500--Sobic003G187400 Sobic003G333600--Sobic007G078000 Sobic003G333600--Sobic001G424700 Sobic003G333600--Sobic001G451000 Sobic003G333600--Sobic010G260500 Sobic003G333600--Sobic004G196700 Sobic003G333600--Sobic001G372700 Sobic003G333600--Sobic007G185900 Sobic004G153600 Sobic004G153600 Sobic003G333600--Sobic004G153600 Sobic003G333600--Sobic005G149500 Sobic005G167300 Sobic005G167300 Sobic001G451000--Sobic005G167300 Sobic002G115801 Sobic002G115801 Sobic001G451000--Sobic002G115801 Sobic001G451000--Sobic010G260500 Sobic002G284200 Sobic002G284200 Sobic001G451000--Sobic002G284200 Sobic001G451000--Sobic003G333600 Sobic001G451000--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic001G451000--Sobic001G439500 Sobic004G198000 Sobic004G198000 Sobic001G451000--Sobic004G198000 Sobic001G451000--Sobic004G196700
Octagon: transcription factors


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