Gene annotation
Transcriptome id Sobic.010G278500.1,Sobic.010G278500.2
Synonym Sb10g031200
Functional annotation expressed protein
UniProt C5Z2M8 , C5Z2N5
Pfam -
Panther DB PTHR13466 PTHR13466:SF6
NCBI CDD KOG2238; Uncharacterized conserved protein TEX2, contains PH domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17820 : Putative integral membrane protein conserved region (DUF2404)
RAP-DB (Rice) LOC_Os02g58110.1 : expressed protein
MaizeGDB (Corn) Zm00025a018588
Brachypodium KQK01564
Barley HORVU6Hr1G027910.28 , HORVU6Hr1G027910.29 , HORVU6Hr1G027910.24 , HORVU6Hr1G027910.26 , HORVU6Hr1G027910.27 , HORVU6Hr1G027910.20 , HORVU6Hr1G027910.21 , HORVU6Hr1G027910.22 , HORVU6Hr1G027910.23 , HORVU6Hr1G027910.19 , HORVU6Hr1G027910.11 , HORVU6Hr1G027910.10 , HORVU6Hr1G027910.12 , HORVU6Hr1G027910.15 , HORVU6Hr1G027910.14 , HORVU6Hr1G027910.17 , HORVU6Hr1G027910.16 , HORVU6Hr1G027910.18 , HORVU6Hr1G093660.1 , HORVU6Hr1G093660.3 , HORVU6Hr1G093660.5 , HORVU6Hr1G093660.6 , HORVU6Hr1G027910.5 , HORVU6Hr1G027910.4 , HORVU6Hr1G027910.7 , HORVU6Hr1G027910.6 , HORVU6Hr1G027910.1 , HORVU6Hr1G027910.3 , HORVU6Hr1G027910.2 , HORVU6Hr1G027910.9 , HORVU6Hr1G027910.8 , HORVU6Hr1G027910.31 , HORVU6Hr1G027910.30
Wheat TraesCS6D02G131500 , TraesCS6B02G170100 , TraesCS6D02G394800 , TraesCS6A02G142100 , TraesCS6B02G460100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G130200 - -
2 Sobic.009G228201 - -
3 Sobic.009G231300 drought induced 19 protein, putative, expressed -
4 Sobic.004G212800 - -
5 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
6 Sobic.008G161401 - -
7 Sobic.008G079100 - -
8 Sobic.010G248200 KID-containing protein, putative, expressed -
9 Sobic.002G283300 protein kinase family protein, putative, expressed -
10 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
11 Sobic.001G128800 RNA-binding zinc finger protein, putative, expressed -
12 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
13 Sobic.008G167300 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.003G244800 - -
15 Sobic.006G009400 G-patch domain containing protein, expressed -
16 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
17 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
18 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
19 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
20 Sobic.001G192900 DNA excision repair protein ERCC-1, putative, expressed K10849: DNA excision repair protein ERCC-1


Gene co-expression network
sample Sobic010G278500 Sobic010G278500 Sobic005G130200 Sobic005G130200 Sobic010G278500--Sobic005G130200 Sobic009G228201 Sobic009G228201 Sobic010G278500--Sobic009G228201 Sobic009G231300 Sobic009G231300 Sobic010G278500--Sobic009G231300 Sobic004G212800 Sobic004G212800 Sobic010G278500--Sobic004G212800 Sobic001G479500 Sobic001G479500 Sobic010G278500--Sobic001G479500 Sobic008G161401 Sobic008G161401 Sobic010G278500--Sobic008G161401 Sobic008G079100 Sobic008G079100 Sobic010G278500--Sobic008G079100 Sobic010G248200 Sobic010G248200 Sobic010G278500--Sobic010G248200 Sobic002G283300 Sobic002G283300 Sobic010G278500--Sobic002G283300 Sobic005G130200--Sobic010G248200 Sobic005G130200--Sobic001G479500 Sobic001G543900 Sobic001G543900 Sobic005G130200--Sobic001G543900 Sobic005G130200--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic005G130200--Sobic009G156000 Sobic005G130200--Sobic002G283300 Sobic005G130200--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic005G130200--Sobic003G057800 Sobic001G477800 Sobic001G477800 Sobic005G130200--Sobic001G477800 Sobic003G015000 Sobic003G015000 Sobic009G228201--Sobic003G015000 Sobic009G228201--Sobic010G278500 Sobic009G257300 Sobic009G257300 Sobic009G228201--Sobic009G257300 Sobic009G228201--Sobic008G079100 Sobic009G228201--Sobic004G212800 Sobic008G167300 Sobic008G167300 Sobic009G228201--Sobic008G167300 Sobic009G228201--Sobic010G248200 Sobic001G345333 Sobic001G345333 Sobic009G228201--Sobic001G345333 Sobic006G046000 Sobic006G046000 Sobic009G228201--Sobic006G046000 Sobic005G130100 Sobic005G130100 Sobic009G231300--Sobic005G130100 Sobic009G180200 Sobic009G180200 Sobic009G231300--Sobic009G180200 Sobic009G109450 Sobic009G109450 Sobic009G231300--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G231300--Sobic009G078500 Sobic007G156500 Sobic007G156500 Sobic009G231300--Sobic007G156500 Sobic005G003200 Sobic005G003200 Sobic009G231300--Sobic005G003200 Sobic003G258400 Sobic003G258400 Sobic009G231300--Sobic003G258400 Sobic004G199600 Sobic004G199600 Sobic009G231300--Sobic004G199600 Sobic010G050600 Sobic010G050600 Sobic009G231300--Sobic010G050600 Sobic007G073400 Sobic007G073400 Sobic004G212800--Sobic007G073400 Sobic004G164600 Sobic004G164600 Sobic004G212800--Sobic004G164600 Sobic001G024200 Sobic001G024200 Sobic004G212800--Sobic001G024200 Sobic004G212800--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic004G212800--Sobic002G007250 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic004G212800--Sobic008G161401 Sobic004G112500 Sobic004G112500 Sobic004G212800--Sobic004G112500 Sobic001G479500--Sobic003G057800 Sobic001G479500--Sobic005G130200 Sobic001G479500--Sobic010G248200 Sobic001G479500--Sobic008G161401 Sobic001G479500--Sobic009G156000 Sobic001G479500--Sobic001G543900 Sobic005G187200 Sobic005G187200 Sobic001G479500--Sobic005G187200 Sobic001G479500--Sobic002G283300 Sobic001G479500--Sobic004G212800 Sobic008G161401--Sobic010G248200 Sobic008G161401--Sobic004G212800 Sobic008G161401--Sobic007G073400 Sobic008G161401--Sobic005G130200 Sobic008G161401--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic008G161401--Sobic003G357500 Sobic008G161401--Sobic009G156000 Sobic002G108800 Sobic002G108800 Sobic008G161401--Sobic002G108800 Sobic008G161401--Sobic001G479500 Sobic008G042250 Sobic008G042250 Sobic008G079100--Sobic008G042250 Sobic009G209800 Sobic009G209800 Sobic008G079100--Sobic009G209800 SobicK024000 SobicK024000 Sobic008G079100--SobicK024000 Sobic003G031750 Sobic003G031750 Sobic008G079100--Sobic003G031750 Sobic001G253100 Sobic001G253100 Sobic008G079100--Sobic001G253100 Sobic005G110430 Sobic005G110430 Sobic008G079100--Sobic005G110430 Sobic008G049701 Sobic008G049701 Sobic008G079100--Sobic008G049701 Sobic002G062300 Sobic002G062300 Sobic008G079100--Sobic002G062300 Sobic008G009500 Sobic008G009500 Sobic008G079100--Sobic008G009500 Sobic010G248200--Sobic002G007250 Sobic010G248200--Sobic001G345333 Sobic010G248200--Sobic004G212800 Sobic010G248200--Sobic005G130200 Sobic002G253500 Sobic002G253500 Sobic010G248200--Sobic002G253500 Sobic010G248200--Sobic008G161401 Sobic010G248200--Sobic002G108800 Sobic001G243901 Sobic001G243901 Sobic010G248200--Sobic001G243901 Sobic010G218500 Sobic010G218500 Sobic010G248200--Sobic010G218500 Sobic002G283300--Sobic009G156000 Sobic010G263800 Sobic010G263800 Sobic002G283300--Sobic010G263800 Sobic002G283300--Sobic004G212800 Sobic004G143700 Sobic004G143700 Sobic002G283300--Sobic004G143700 Sobic006G009400 Sobic006G009400 Sobic002G283300--Sobic006G009400 SobicK016900 SobicK016900 Sobic002G283300--SobicK016900 Sobic001G287301 Sobic001G287301 Sobic002G283300--Sobic001G287301 Sobic002G283300--Sobic010G248200 Sobic002G283300--Sobic005G130200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.