Gene annotation
Transcriptome id Sobic.009G119200.2,Sobic.009G119200.3,Sobic.009G119200.4,Sobic.009G119200.1
Synonym Sb09g018730
Functional annotation "beta-1,3-glucanase " (PubMedID : 25311645)
glycosyl hydrolases family 17, putative, expressed
UniProt A0A1B6P873 , A0A1B6P878
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF119 PTHR32227:SF119 PTHR32227
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004553; hydrolase activity, hydrolyzing O-glycosyl compounds GO:0005975carbohydrate metabolic process GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G16260 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os05g31140.1 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a043498 , Zm00025a026062 , Zm00025a036936 , Zm00025a043501
Brachypodium KQK06584 , KQK06585 , KQK11484 , KQK05741 , KQK05742 , KQK05743
Barley HORVU3Hr1G111160.3 , HORVU3Hr1G111160.2 , HORVU3Hr1G111160.1 , HORVU3Hr1G111160.7 , HORVU3Hr1G111160.5 , HORVU3Hr1G111160.4 , HORVU3Hr1G111160.8 , HORVU3Hr1G106140.1 , HORVU3Hr1G106140.3 , HORVU3Hr1G106140.2 , HORVU3Hr1G106140.5 , HORVU3Hr1G106140.4 , HORVU3Hr1G106140.6 , HORVU1Hr1G057680.5 , HORVU1Hr1G057680.4 , HORVU1Hr1G057680.6 , HORVU1Hr1G057680.1 , HORVU1Hr1G057680.3 , HORVU1Hr1G057680.2 , HORVU3Hr1G105790.9 , HORVU3Hr1G105790.6 , HORVU3Hr1G111160.11 , HORVU7Hr1G120450.3 , HORVU7Hr1G120450.2 , HORVU7Hr1G120450.1 , HORVU7Hr1G120450.5 , HORVU7Hr1G120450.4 , HORVU7Hr1G051310.3 , HORVU7Hr1G051310.2 , HORVU7Hr1G051310.1 , HORVU3Hr1G105600.1 , HORVU3Hr1G105790.10 , HORVU3Hr1G105620.1 , HORVU3Hr1G105620.3 , HORVU3Hr1G105620.2 , HORVU3Hr1G105620.5 , HORVU3Hr1G105620.4 , HORVU3Hr1G105620.6 , HORVU3Hr1G105420.3 , HORVU3Hr1G105420.2 , HORVU3Hr1G105420.1
Wheat TraesCS1B02G249000 , TraesCS3B02G530000 , TraesCS3D02G478800 , TraesCS3B02G525000 , TraesCS7D02G552500 , TraesCS3B02G571400 , TraesCS1D02G237500 , TraesCS3D02G477700 , TraesCS3B02G526000 , TraesCS3D02G475200 , TraesCS7B02G482600 , TraesCS3D02G512300 , TraesCS1A02G234600 , TraesCS3A02G483100 , TraesCS3B02G530500
Populus -


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cDNA sequences
Sobic.009G119200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
2 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
3 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
4 Sobic.006G149700 DUF584 domain containing protein, putative, expressed -
5 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
6 Sobic.001G490000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLA4 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
7 Sobic.004G153501 - -
8 Sobic.001G151500 choline transporter-related, putative, expressed -
9 Sobic.004G153400 OsFBK7 - F-box domain and kelch repeat containing protein, expressed -
10 Sobic.002G046800 transketolase, putative, expressed K00167: BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit
11 Sobic.002G113300 expressed protein -
12 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
13 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
14 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
15 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
16 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
17 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
18 Sobic.009G216100 polygalacturonase, putative, expressed -
19 Sobic.003G069500 regulator of ribonuclease, putative, expressed -
20 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase


Gene co-expression network
sample Sobic009G119200 Sobic009G119200 Sobic001G373100 Sobic001G373100 Sobic009G119200--Sobic001G373100 Sobic004G037900 Sobic004G037900 Sobic009G119200--Sobic004G037900 Sobic008G160700 Sobic008G160700 Sobic009G119200--Sobic008G160700 Sobic006G149700 Sobic006G149700 Sobic009G119200--Sobic006G149700 Sobic010G001600 Sobic010G001600 Sobic009G119200--Sobic010G001600 Sobic001G490000 Sobic001G490000 Sobic009G119200--Sobic001G490000 Sobic004G153501 Sobic004G153501 Sobic009G119200--Sobic004G153501 Sobic001G151500 Sobic001G151500 Sobic009G119200--Sobic001G151500 Sobic004G153400 Sobic004G153400 Sobic009G119200--Sobic004G153400 Sobic001G373100--Sobic008G160700 Sobic001G373100--Sobic009G119200 Sobic010G078100 Sobic010G078100 Sobic001G373100--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic001G373100--Sobic001G156100 Sobic001G373100--Sobic006G149700 Sobic009G027000 Sobic009G027000 Sobic001G373100--Sobic009G027000 Sobic003G145900 Sobic003G145900 Sobic001G373100--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic001G373100--Sobic001G359400 Sobic002G113300 Sobic002G113300 Sobic001G373100--Sobic002G113300 Sobic004G037900--Sobic001G151500 Sobic002G188500 Sobic002G188500 Sobic004G037900--Sobic002G188500 Sobic004G037900--Sobic008G160700 Sobic004G037900--Sobic001G490000 Sobic004G037900--Sobic010G001600 Sobic003G005800 Sobic003G005800 Sobic004G037900--Sobic003G005800 Sobic004G037900--Sobic009G119200 Sobic004G037900--Sobic003G145900 Sobic009G235900 Sobic009G235900 Sobic004G037900--Sobic009G235900 Sobic008G160700--Sobic010G001600 Sobic001G194900 Sobic001G194900 Sobic008G160700--Sobic001G194900 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic006G124900 Sobic006G124900 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic008G160700--Sobic009G027000 Sobic006G149700--Sobic001G373100 Sobic006G149700--Sobic009G119200 Sobic006G149700--Sobic001G156100 Sobic006G149700--Sobic001G490000 Sobic003G093300 Sobic003G093300 Sobic006G149700--Sobic003G093300 Sobic006G149700--Sobic004G037900 Sobic006G149700--Sobic002G113300 Sobic009G216100 Sobic009G216100 Sobic006G149700--Sobic009G216100 Sobic006G149700--Sobic010G001600 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic001G490000--Sobic004G037900 Sobic001G490000--Sobic010G001600 Sobic001G490000--Sobic003G005800 Sobic001G490000--Sobic008G160700 Sobic001G490000--Sobic001G373100 Sobic001G490000--Sobic001G151500 Sobic001G490000--Sobic003G145900 Sobic006G114000 Sobic006G114000 Sobic001G490000--Sobic006G114000 Sobic001G490000--Sobic009G235900 Sobic004G153501--Sobic004G153400 Sobic002G046800 Sobic002G046800 Sobic004G153501--Sobic002G046800 Sobic006G138400 Sobic006G138400 Sobic004G153501--Sobic006G138400 Sobic003G069500 Sobic003G069500 Sobic004G153501--Sobic003G069500 Sobic004G153501--Sobic003G093300 Sobic001G123000 Sobic001G123000 Sobic004G153501--Sobic001G123000 Sobic007G148200 Sobic007G148200 Sobic004G153501--Sobic007G148200 Sobic001G048766 Sobic001G048766 Sobic004G153501--Sobic001G048766 Sobic007G190333 Sobic007G190333 Sobic004G153501--Sobic007G190333 Sobic001G151500--Sobic004G037900 Sobic001G151500--Sobic001G490000 Sobic001G151500--Sobic010G001600 Sobic001G151500--Sobic008G160700 Sobic010G173800 Sobic010G173800 Sobic001G151500--Sobic010G173800 Sobic001G151500--Sobic009G119200 Sobic001G151500--Sobic002G188500 Sobic001G151500--Sobic003G005800 Sobic001G151500--Sobic003G145900 Sobic004G153400--Sobic004G153501 Sobic004G153400--Sobic002G046800 Sobic004G153400--Sobic003G093300 Sobic001G111500 Sobic001G111500 Sobic004G153400--Sobic001G111500 Sobic004G153400--Sobic001G123000 Sobic002G226000 Sobic002G226000 Sobic004G153400--Sobic002G226000 Sobic001G111366 Sobic001G111366 Sobic004G153400--Sobic001G111366 Sobic004G153400--Sobic007G148200 Sobic004G153400--Sobic009G235900
Octagon: transcription factors


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