Gene annotation
Transcriptome id Sobic.009G216100.4,Sobic.009G216100.2,Sobic.009G216100.3
Synonym Sb09g027150
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1Z5R3L5 , A0A1Z5R4B2 , C5YUW4
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT1G80170 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os05g46510.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a050730 , Zm00025a042346 , Zm00025a044423 , Zm00025a026482
Brachypodium KQK05107 , KQK05109 , KQJ84052 , KQK05091
Barley HORVU1Hr1G079170.39 , HORVU1Hr1G079170.35 , HORVU1Hr1G079170.34 , HORVU1Hr1G079170.37 , HORVU1Hr1G079170.36 , HORVU1Hr1G079170.31 , HORVU1Hr1G079170.30 , HORVU1Hr1G079170.33 , HORVU1Hr1G079170.32 , HORVU6Hr1G015390.2 , HORVU6Hr1G015390.3 , HORVU6Hr1G015390.1 , HORVU6Hr1G015390.6 , HORVU6Hr1G015390.4 , HORVU6Hr1G015390.5 , HORVU1Hr1G079170.28 , HORVU1Hr1G079170.29 , HORVU1Hr1G079170.22 , HORVU1Hr1G079170.23 , HORVU1Hr1G079170.20 , HORVU1Hr1G079170.21 , HORVU1Hr1G079170.26 , HORVU1Hr1G079170.27 , HORVU1Hr1G079170.24 , HORVU1Hr1G079170.25 , HORVU1Hr1G079170.56 , HORVU1Hr1G079170.55 , HORVU1Hr1G079170.54 , HORVU1Hr1G079170.53 , HORVU1Hr1G079170.52 , HORVU1Hr1G079170.51 , HORVU1Hr1G079170.50 , HORVU1Hr1G079170.48 , HORVU1Hr1G079170.49 , HORVU1Hr1G079170.44 , HORVU1Hr1G079170.45 , HORVU1Hr1G079170.46 , HORVU1Hr1G079170.47 , HORVU1Hr1G079170.40 , HORVU1Hr1G079170.41 , HORVU1Hr1G079170.42 , HORVU1Hr1G079170.43 , HORVU7Hr1G094750.2
Wheat TraesCS1B02G382300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCS1D02G370300 , TraesCSU02G113500 , TraesCS7A02G404700 , TraesCS7D02G397900 , TraesCS7B02G304500 , TraesCS6B02G118000 , TraesCS6B02G118000 , TraesCS1B02G382200 , TraesCS1B02G382200 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS1A02G364800 , TraesCS7A02G404900 , TraesCS4A02G229600 , TraesCS6A02G084500 , TraesCS7D02G398900 , TraesCS2A02G405100 , TraesCS7B02G304100 , TraesCS7D02G399000 , TraesCS7B02G304400
Populus -


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cDNA sequences
Sobic.009G216100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
2 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
3 Sobic.006G149700 DUF584 domain containing protein, putative, expressed -
4 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
5 Sobic.002G113300 expressed protein -
6 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
7 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G081100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsWAK2 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
9 Sobic.009G119200 "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
10 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
11 Sobic.009G157900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.010G042900 expressed protein -
13 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
15 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
16 Sobic.001G490000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLA4 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
17 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
18 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
19 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
20 Sobic.006G122400 uncharacterized glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic009G216100 Sobic009G216100 Sobic009G027000 Sobic009G027000 Sobic009G216100--Sobic009G027000 Sobic004G297400 Sobic004G297400 Sobic009G216100--Sobic004G297400 Sobic006G149700 Sobic006G149700 Sobic009G216100--Sobic006G149700 Sobic001G373100 Sobic001G373100 Sobic009G216100--Sobic001G373100 Sobic002G113300 Sobic002G113300 Sobic009G216100--Sobic002G113300 Sobic001G023200 Sobic001G023200 Sobic009G216100--Sobic001G023200 Sobic001G028700 Sobic001G028700 Sobic009G216100--Sobic001G028700 Sobic003G081100 Sobic003G081100 Sobic009G216100--Sobic003G081100 Sobic009G119200 Sobic009G119200 Sobic009G216100--Sobic009G119200 Sobic006G122400 Sobic006G122400 Sobic009G027000--Sobic006G122400 Sobic005G181000 Sobic005G181000 Sobic009G027000--Sobic005G181000 Sobic008G160700 Sobic008G160700 Sobic009G027000--Sobic008G160700 Sobic009G027000--Sobic004G297400 Sobic010G078100 Sobic010G078100 Sobic009G027000--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic009G027000--Sobic007G130600 Sobic001G156100 Sobic001G156100 Sobic009G027000--Sobic001G156100 Sobic007G078000 Sobic007G078000 Sobic009G027000--Sobic007G078000 Sobic004G320000 Sobic004G320000 Sobic009G027000--Sobic004G320000 Sobic004G297400--Sobic009G027000 Sobic004G297400--Sobic001G028700 Sobic004G297400--Sobic006G122400 Sobic004G297400--Sobic010G078100 Sobic010G042900 Sobic010G042900 Sobic004G297400--Sobic010G042900 Sobic004G297400--Sobic008G160700 Sobic001G111366 Sobic001G111366 Sobic004G297400--Sobic001G111366 Sobic007G002200 Sobic007G002200 Sobic004G297400--Sobic007G002200 Sobic001G111500 Sobic001G111500 Sobic004G297400--Sobic001G111500 Sobic006G149700--Sobic001G373100 Sobic006G149700--Sobic009G119200 Sobic006G149700--Sobic001G156100 Sobic001G490000 Sobic001G490000 Sobic006G149700--Sobic001G490000 Sobic003G093300 Sobic003G093300 Sobic006G149700--Sobic003G093300 Sobic004G037900 Sobic004G037900 Sobic006G149700--Sobic004G037900 Sobic006G149700--Sobic002G113300 Sobic006G149700--Sobic009G216100 Sobic010G001600 Sobic010G001600 Sobic006G149700--Sobic010G001600 Sobic001G373100--Sobic008G160700 Sobic001G373100--Sobic009G119200 Sobic001G373100--Sobic010G078100 Sobic001G373100--Sobic001G156100 Sobic001G373100--Sobic006G149700 Sobic001G373100--Sobic009G027000 Sobic003G145900 Sobic003G145900 Sobic001G373100--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic001G373100--Sobic001G359400 Sobic001G373100--Sobic002G113300 Sobic006G127100 Sobic006G127100 Sobic002G113300--Sobic006G127100 Sobic007G219900 Sobic007G219900 Sobic002G113300--Sobic007G219900 Sobic002G113300--Sobic001G156100 Sobic003G009100 Sobic003G009100 Sobic002G113300--Sobic003G009100 Sobic002G113300--Sobic001G373100 Sobic004G345800 Sobic004G345800 Sobic002G113300--Sobic004G345800 Sobic008G021800 Sobic008G021800 Sobic002G113300--Sobic008G021800 Sobic001G447500 Sobic001G447500 Sobic002G113300--Sobic001G447500 Sobic003G241000 Sobic003G241000 Sobic002G113300--Sobic003G241000 Sobic001G023200--Sobic003G009100 Sobic002G258100 Sobic002G258100 Sobic001G023200--Sobic002G258100 Sobic001G010400 Sobic001G010400 Sobic001G023200--Sobic001G010400 Sobic004G347300 Sobic004G347300 Sobic001G023200--Sobic004G347300 Sobic001G393800 Sobic001G393800 Sobic001G023200--Sobic001G393800 Sobic004G203100 Sobic004G203100 Sobic001G023200--Sobic004G203100 Sobic010G016400 Sobic010G016400 Sobic001G023200--Sobic010G016400 Sobic001G023200--Sobic002G113300 Sobic007G106900 Sobic007G106900 Sobic001G023200--Sobic007G106900 Sobic001G028700--Sobic001G111366 Sobic001G028700--Sobic001G111500 Sobic001G028700--Sobic004G297400 Sobic001G028700--Sobic010G042900 Sobic009G235900 Sobic009G235900 Sobic001G028700--Sobic009G235900 Sobic004G006300 Sobic004G006300 Sobic001G028700--Sobic004G006300 Sobic004G034400 Sobic004G034400 Sobic001G028700--Sobic004G034400 Sobic006G209500 Sobic006G209500 Sobic001G028700--Sobic006G209500 Sobic001G028700--Sobic009G027000 Sobic004G153600 Sobic004G153600 Sobic003G081100--Sobic004G153600 Sobic003G079900 Sobic003G079900 Sobic003G081100--Sobic003G079900 Sobic009G137800 Sobic009G137800 Sobic003G081100--Sobic009G137800 Sobic003G333600 Sobic003G333600 Sobic003G081100--Sobic003G333600 Sobic001G351700 Sobic001G351700 Sobic003G081100--Sobic001G351700 Sobic001G290200 Sobic001G290200 Sobic003G081100--Sobic001G290200 Sobic003G305400 Sobic003G305400 Sobic003G081100--Sobic003G305400 Sobic007G026500 Sobic007G026500 Sobic003G081100--Sobic007G026500 Sobic001G424700 Sobic001G424700 Sobic003G081100--Sobic001G424700 Sobic009G119200--Sobic001G373100 Sobic009G119200--Sobic004G037900 Sobic009G119200--Sobic008G160700 Sobic009G119200--Sobic006G149700 Sobic009G119200--Sobic010G001600 Sobic009G119200--Sobic001G490000 Sobic004G153501 Sobic004G153501 Sobic009G119200--Sobic004G153501 Sobic001G151500 Sobic001G151500 Sobic009G119200--Sobic001G151500 Sobic004G153400 Sobic004G153400 Sobic009G119200--Sobic004G153400
Octagon: transcription factors


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