Gene annotation
Transcriptome id Sobic.009G157900.1
Synonym Sb09g022110, MEE59
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5YYV9
Pfam -
Panther DB PTHR34686 PTHR34686:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37300 : maternal effect embryo arrest 59
RAP-DB (Rice) LOC_Os05g37830.1 : expressed protein
MaizeGDB (Corn) Zm00025a043777
Brachypodium KQK05976 , KQK05977
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G157900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
2 Sobic.010G144400 glycosyltransferase, putative, expressed -
3 Sobic.009G237600 transcription factor, putative, expressed K09060: plant G-box-binding factor
4 Sobic.001G230900 - K07910: Ras-related protein Rab-18
5 Sobic.002G236200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transcription factor BIM2, putative, expressed -
6 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
7 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
8 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
9 Sobic.010G042900 expressed protein -
10 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
12 Sobic.003G081100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsWAK2 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
13 Sobic.010G228600 LSM domain containing protein, expressed -
14 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
15 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
16 Sobic.003G093900 splicing factor, putative, expressed -
17 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
18 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
19 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
20 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G157900 Sobic009G157900 Sobic004G203100 Sobic004G203100 Sobic009G157900--Sobic004G203100 Sobic010G144400 Sobic010G144400 Sobic009G157900--Sobic010G144400 Sobic009G237600 Sobic009G237600 Sobic009G157900--Sobic009G237600 Sobic001G230900 Sobic001G230900 Sobic009G157900--Sobic001G230900 Sobic002G236200 Sobic002G236200 Sobic009G157900--Sobic002G236200 Sobic001G478300 Sobic001G478300 Sobic009G157900--Sobic001G478300 Sobic001G427800 Sobic001G427800 Sobic009G157900--Sobic001G427800 Sobic010G238700 Sobic010G238700 Sobic009G157900--Sobic010G238700 Sobic010G042900 Sobic010G042900 Sobic009G157900--Sobic010G042900 Sobic010G168600 Sobic010G168600 Sobic004G203100--Sobic010G168600 Sobic003G007500 Sobic003G007500 Sobic004G203100--Sobic003G007500 Sobic002G352700 Sobic002G352700 Sobic004G203100--Sobic002G352700 Sobic004G203100--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic004G203100--Sobic008G180900 Sobic004G203100--Sobic010G238700 Sobic009G054700 Sobic009G054700 Sobic004G203100--Sobic009G054700 Sobic010G083700 Sobic010G083700 Sobic004G203100--Sobic010G083700 Sobic010G058900 Sobic010G058900 Sobic004G203100--Sobic010G058900 Sobic002G068300 Sobic002G068300 Sobic010G144400--Sobic002G068300 Sobic001G056700 Sobic001G056700 Sobic010G144400--Sobic001G056700 Sobic010G228600 Sobic010G228600 Sobic010G144400--Sobic010G228600 Sobic004G172700 Sobic004G172700 Sobic010G144400--Sobic004G172700 Sobic001G090000 Sobic001G090000 Sobic010G144400--Sobic001G090000 Sobic009G016201 Sobic009G016201 Sobic010G144400--Sobic009G016201 Sobic002G258100 Sobic002G258100 Sobic010G144400--Sobic002G258100 Sobic001G471900 Sobic001G471900 Sobic010G144400--Sobic001G471900 Sobic001G253600 Sobic001G253600 Sobic010G144400--Sobic001G253600 Sobic009G237600--Sobic001G478300 Sobic001G076000 Sobic001G076000 Sobic009G237600--Sobic001G076000 Sobic009G237600--Sobic001G427800 Sobic009G237600--Sobic010G228600 Sobic009G011700 Sobic009G011700 Sobic009G237600--Sobic009G011700 Sobic009G237600--Sobic009G157900 Sobic001G149700 Sobic001G149700 Sobic009G237600--Sobic001G149700 Sobic007G002200 Sobic007G002200 Sobic009G237600--Sobic007G002200 Sobic010G071200 Sobic010G071200 Sobic009G237600--Sobic010G071200 Sobic001G230900--Sobic010G238700 Sobic009G036900 Sobic009G036900 Sobic001G230900--Sobic009G036900 Sobic001G230900--Sobic010G144400 Sobic001G230900--Sobic002G068300 Sobic003G024800 Sobic003G024800 Sobic001G230900--Sobic003G024800 Sobic008G132800 Sobic008G132800 Sobic001G230900--Sobic008G132800 Sobic001G230900--Sobic010G228600 Sobic001G230900--Sobic001G090000 Sobic001G040300 Sobic001G040300 Sobic001G230900--Sobic001G040300 Sobic002G236200--Sobic010G238700 Sobic002G121000 Sobic002G121000 Sobic002G236200--Sobic002G121000 Sobic002G236200--Sobic001G230900 Sobic002G236200--Sobic009G036900 Sobic002G236200--Sobic009G157900 Sobic002G236200--Sobic002G068300 Sobic003G189700 Sobic003G189700 Sobic002G236200--Sobic003G189700 Sobic009G034400 Sobic009G034400 Sobic002G236200--Sobic009G034400 Sobic002G236200--Sobic010G144400 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic001G427800--Sobic001G478300 Sobic001G427800--Sobic001G149700 Sobic001G427800--Sobic010G071200 Sobic001G427800--Sobic003G273100 Sobic001G371300 Sobic001G371300 Sobic001G427800--Sobic001G371300 Sobic002G291300 Sobic002G291300 Sobic001G427800--Sobic002G291300 Sobic003G093900 Sobic003G093900 Sobic001G427800--Sobic003G093900 Sobic008G142700 Sobic008G142700 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600 Sobic006G222400 Sobic006G222400 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic010G238700--Sobic004G203100 Sobic010G238700--Sobic003G007500 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700 Sobic003G093600 Sobic003G093600 Sobic010G042900--Sobic003G093600 Sobic007G023700 Sobic007G023700 Sobic010G042900--Sobic007G023700 Sobic001G347600 Sobic001G347600 Sobic010G042900--Sobic001G347600 Sobic005G007800 Sobic005G007800 Sobic010G042900--Sobic005G007800 Sobic004G034400 Sobic004G034400 Sobic010G042900--Sobic004G034400 Sobic001G028700 Sobic001G028700 Sobic010G042900--Sobic001G028700 Sobic009G235900 Sobic009G235900 Sobic010G042900--Sobic009G235900 Sobic009G117400 Sobic009G117400 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.