Gene annotation
Transcriptome id Sobic.003G093900.1
Synonym Sb03g007850
Functional annotation splicing factor, putative, expressed
UniProt A0A1B6Q2A3
Pfam -
Panther DB PTHR37715
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01100 : -
RAP-DB (Rice) LOC_Os01g03060.3 : splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a023755 , Zm00025a035502
Brachypodium -
Barley HORVU3Hr1G006250.3 , HORVU3Hr1G006250.8
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
2 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
3 Sobic.008G142700 expressed protein -
4 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
5 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
6 Sobic.004G072800 expressed protein -
7 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
8 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
9 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
12 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
13 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
14 Sobic.002G272600 TBC domain containing protein, expressed -
15 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
16 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
18 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
19 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
20 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6


Gene co-expression network
sample Sobic003G093900 Sobic003G093900 Sobic001G427800 Sobic001G427800 Sobic003G093900--Sobic001G427800 Sobic001G478300 Sobic001G478300 Sobic003G093900--Sobic001G478300 Sobic008G142700 Sobic008G142700 Sobic003G093900--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic003G093900--Sobic001G512900 Sobic004G350100 Sobic004G350100 Sobic003G093900--Sobic004G350100 Sobic004G072800 Sobic004G072800 Sobic003G093900--Sobic004G072800 Sobic010G033400 Sobic010G033400 Sobic003G093900--Sobic010G033400 Sobic009G193400 Sobic009G193400 Sobic003G093900--Sobic009G193400 Sobic006G218700 Sobic006G218700 Sobic003G093900--Sobic006G218700 Sobic001G427800--Sobic001G478300 Sobic001G149700 Sobic001G149700 Sobic001G427800--Sobic001G149700 Sobic010G071200 Sobic010G071200 Sobic001G427800--Sobic010G071200 Sobic003G273100 Sobic003G273100 Sobic001G427800--Sobic003G273100 Sobic001G371300 Sobic001G371300 Sobic001G427800--Sobic001G371300 Sobic002G291300 Sobic002G291300 Sobic001G427800--Sobic002G291300 Sobic001G427800--Sobic003G093900 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic008G142700--Sobic010G071200 Sobic008G142700--Sobic001G512900 Sobic008G142700--Sobic010G055500 Sobic008G142700--Sobic001G149700 Sobic007G063200 Sobic007G063200 Sobic008G142700--Sobic007G063200 Sobic008G142700--Sobic003G350600 Sobic006G109300 Sobic006G109300 Sobic008G142700--Sobic006G109300 Sobic009G246950 Sobic009G246950 Sobic008G142700--Sobic009G246950 Sobic008G142700--Sobic001G478300 Sobic001G512900--Sobic010G071200 Sobic001G512900--Sobic010G055500 Sobic001G512900--Sobic008G142700 Sobic008G174300 Sobic008G174300 Sobic001G512900--Sobic008G174300 Sobic001G083600 Sobic001G083600 Sobic001G512900--Sobic001G083600 Sobic001G390500 Sobic001G390500 Sobic001G512900--Sobic001G390500 Sobic001G512900--Sobic001G149700 Sobic003G127400 Sobic003G127400 Sobic001G512900--Sobic003G127400 Sobic001G512900--Sobic009G246950 Sobic007G118200 Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic004G350100--Sobic010G033400 Sobic006G252700 Sobic006G252700 Sobic004G350100--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic001G067900 Sobic001G067900 Sobic004G072800--Sobic001G067900 Sobic004G072800--Sobic003G350600 Sobic003G007500 Sobic003G007500 Sobic004G072800--Sobic003G007500 Sobic002G313500 Sobic002G313500 Sobic004G072800--Sobic002G313500 Sobic007G118000 Sobic007G118000 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic002G281300 Sobic002G281300 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic003G045400 Sobic003G045400 Sobic004G072800--Sobic003G045400 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic009G198100 Sobic009G198100 Sobic010G033400--Sobic009G198100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G260500 Sobic010G260500 Sobic010G033400--Sobic010G260500 Sobic003G359300 Sobic003G359300 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic001G131800 Sobic001G131800 Sobic010G033400--Sobic001G131800 Sobic009G193400--Sobic003G007500 Sobic003G433100 Sobic003G433100 Sobic009G193400--Sobic003G433100 Sobic009G171700 Sobic009G171700 Sobic009G193400--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G193400--Sobic008G180900 Sobic003G295400 Sobic003G295400 Sobic009G193400--Sobic003G295400 Sobic004G104900 Sobic004G104900 Sobic009G193400--Sobic004G104900 Sobic009G193400--Sobic001G478300 Sobic002G413000 Sobic002G413000 Sobic009G193400--Sobic002G413000 Sobic010G083700 Sobic010G083700 Sobic009G193400--Sobic010G083700 Sobic009G134600 Sobic009G134600 Sobic006G218700--Sobic009G134600 Sobic003G396000 Sobic003G396000 Sobic006G218700--Sobic003G396000 Sobic003G044200 Sobic003G044200 Sobic006G218700--Sobic003G044200 Sobic003G119800 Sobic003G119800 Sobic006G218700--Sobic003G119800 Sobic003G379700 Sobic003G379700 Sobic006G218700--Sobic003G379700 Sobic001G076000 Sobic001G076000 Sobic006G218700--Sobic001G076000 Sobic009G167600 Sobic009G167600 Sobic006G218700--Sobic009G167600 Sobic003G056500 Sobic003G056500 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.