Gene annotation
Transcriptome id Sobic.003G109100.1
Synonym Sb03g009170, ATDPL1, DPL1
Functional annotation decarboxylase, putative, expressed
UniProt C5XFN1
Pfam PF00282
Panther DB PTHR11999 PTHR11999:SF5
NCBI CDD KOG1383; Glutamate decarboxylase/sphingosine phosphate lyase
KEGG Orthology K01634; SGPL1, sphinganine-1-phosphate aldolase
Gene Ontology GO:0016831; carboxy-lyase activity


Orthologs (automatic annotation)
TAIR AT1G27980 : dihydrosphingosine phosphate lyase
RAP-DB (Rice) LOC_Os01g01080.1 : decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a035383
Brachypodium KQK02796
Barley HORVU3Hr1G015150.5 , HORVU3Hr1G015150.4 , HORVU3Hr1G015150.7 , HORVU3Hr1G015150.6 , HORVU3Hr1G015150.1 , HORVU3Hr1G015150.2 , HORVU3Hr1G015150.8 , HORVU3Hr1G015150.21 , HORVU3Hr1G015150.20 , HORVU3Hr1G015150.11 , HORVU3Hr1G015150.10 , HORVU3Hr1G015150.13 , HORVU3Hr1G015150.12 , HORVU3Hr1G015150.15 , HORVU3Hr1G015150.14 , HORVU3Hr1G015150.17 , HORVU3Hr1G015150.16 , HORVU3Hr1G015150.19 , HORVU3Hr1G015150.18
Wheat TraesCS3B02G100600 , TraesCS3D02G085400 , TraesCS3A02G085400 , TraesCS3A02G085400 , TraesCS3A02G085400
Populus -


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cDNA sequences
Sobic.003G109100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
2 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
3 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
4 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
5 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
6 Sobic.006G245400 -(PubMedID : 34525227)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
7 Sobic.001G137100 homeodomain protein, putative, expressed -
8 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein
9 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
10 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
11 Sobic.008G070500 GTP binding protein, putative, expressed -
12 Sobic.001G309400 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
13 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.009G249200 transmembrane protein, putative, expressed -
15 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
16 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
17 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
18 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
19 Sobic.003G426800 expressed protein -
20 Sobic.001G292200 dynamin family protein, putative, expressed -


Gene co-expression network
sample Sobic003G109100 Sobic003G109100 Sobic004G052900 Sobic004G052900 Sobic003G109100--Sobic004G052900 Sobic007G024700 Sobic007G024700 Sobic003G109100--Sobic007G024700 Sobic001G270400 Sobic001G270400 Sobic003G109100--Sobic001G270400 Sobic003G100800 Sobic003G100800 Sobic003G109100--Sobic003G100800 Sobic009G094300 Sobic009G094300 Sobic003G109100--Sobic009G094300 Sobic006G245400 Sobic006G245400 Sobic003G109100--Sobic006G245400 Sobic001G137100 Sobic001G137100 Sobic003G109100--Sobic001G137100 Sobic002G340100 Sobic002G340100 Sobic003G109100--Sobic002G340100 Sobic010G205800 Sobic010G205800 Sobic003G109100--Sobic010G205800 Sobic004G052900--Sobic003G109100 Sobic004G052900--Sobic007G024700 Sobic004G052900--Sobic003G100800 Sobic007G172400 Sobic007G172400 Sobic004G052900--Sobic007G172400 Sobic004G052900--Sobic002G340100 Sobic002G419800 Sobic002G419800 Sobic004G052900--Sobic002G419800 Sobic004G052900--Sobic006G245400 Sobic001G248300 Sobic001G248300 Sobic004G052900--Sobic001G248300 Sobic004G052900--Sobic009G094300 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic007G024700--Sobic004G052900 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic007G024700--Sobic002G419800 Sobic001G270400--Sobic007G024700 Sobic001G270400--Sobic009G094300 Sobic001G270400--Sobic010G205800 Sobic001G270400--Sobic003G109100 Sobic001G270400--Sobic001G137100 Sobic001G270400--Sobic002G270500 Sobic001G121200 Sobic001G121200 Sobic001G270400--Sobic001G121200 Sobic001G270400--Sobic004G052900 Sobic001G199100 Sobic001G199100 Sobic001G270400--Sobic001G199100 Sobic003G100800--Sobic004G052900 Sobic003G100800--Sobic007G172400 Sobic003G100800--Sobic003G109100 Sobic003G100800--Sobic007G024700 Sobic004G329400 Sobic004G329400 Sobic003G100800--Sobic004G329400 Sobic003G100800--Sobic001G248300 Sobic001G178700 Sobic001G178700 Sobic003G100800--Sobic001G178700 Sobic010G251200 Sobic010G251200 Sobic003G100800--Sobic010G251200 Sobic004G113400 Sobic004G113400 Sobic003G100800--Sobic004G113400 Sobic009G094300--Sobic007G024700 Sobic009G094300--Sobic004G113400 Sobic009G094300--Sobic002G270500 Sobic009G094300--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic009G094300--Sobic005G157000 Sobic009G094300--Sobic004G052900 Sobic009G094300--Sobic001G270400 Sobic009G094300--Sobic001G248300 Sobic001G207400 Sobic001G207400 Sobic009G094300--Sobic001G207400 Sobic006G245400--Sobic002G340100 Sobic006G245400--Sobic007G172400 Sobic006G245400--Sobic004G052900 Sobic006G245400--Sobic004G113400 Sobic001G114000 Sobic001G114000 Sobic006G245400--Sobic001G114000 Sobic006G237400 Sobic006G237400 Sobic006G245400--Sobic006G237400 Sobic007G217000 Sobic007G217000 Sobic006G245400--Sobic007G217000 Sobic001G065000 Sobic001G065000 Sobic006G245400--Sobic001G065000 Sobic001G474600 Sobic001G474600 Sobic006G245400--Sobic001G474600 Sobic001G390800 Sobic001G390800 Sobic001G137100--Sobic001G390800 Sobic001G137100--Sobic007G024700 Sobic010G228400 Sobic010G228400 Sobic001G137100--Sobic010G228400 Sobic001G137100--Sobic002G132000 Sobic001G137100--Sobic001G270400 Sobic002G130800 Sobic002G130800 Sobic001G137100--Sobic002G130800 Sobic001G137100--Sobic009G094300 Sobic002G111000 Sobic002G111000 Sobic001G137100--Sobic002G111000 Sobic002G427050 Sobic002G427050 Sobic001G137100--Sobic002G427050 Sobic001G292200 Sobic001G292200 Sobic002G340100--Sobic001G292200 Sobic001G071400 Sobic001G071400 Sobic002G340100--Sobic001G071400 Sobic002G340100--Sobic006G245400 Sobic002G315200 Sobic002G315200 Sobic002G340100--Sobic002G315200 Sobic009G135800 Sobic009G135800 Sobic002G340100--Sobic009G135800 Sobic002G340100--Sobic001G114000 Sobic002G340100--Sobic007G217000 Sobic002G340100--Sobic004G052900 Sobic002G340100--Sobic001G474600 Sobic010G205800--Sobic001G121200 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200
Octagon: transcription factors


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